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1
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6
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3.4k
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How do I convert Hisat2 + stringtie gtf to EVM compatible gff3
RNA-Seq gene prediction
updated 3.7 years ago by ▴ 10 • written 5.0 years ago by ▴ 130
7
votes
9
replies
13k
views
8 follow
Any methods available to do QC analysis of Pacbio raw data??
Assembly genome Pacbio next-gen sequencing
updated 2.6 years ago by • 0 • written 8.1 years ago by ▴ 130
0
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1
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3.4k
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Comment: C: How do I convert Hisat2 + stringtie gtf to EVM compatible gff3
5.0 years ago by karthic ▴ 130
0
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0
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2.2k
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Comment: C: Filter gmap GFF3 output by identity
5.1 years ago by karthic ▴ 130
1
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2
replies
2.2k
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Filter gmap GFF3 output by identity
gene prediction genome gmap
updated 5.1 years ago by 9.3k • written 5.1 years ago by ▴ 130
0
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0
replies
10k
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Comment: C: Converting GFF to GTF
5.1 years ago by karthic ▴ 130
0
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1
reply
10k
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Comment: C: Converting GFF to GTF
5.1 years ago by karthic ▴ 130
0
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0
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1.8k
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Comment: C: Alignng RNAseq data for gene prediction
5.1 years ago by karthic ▴ 130
0
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10
replies
1.8k
views
Alignng RNAseq data for gene prediction
gene prediction RNA-Seq
updated 5.1 years ago by ★ 1.5k • written 5.1 years ago by ▴ 130
0
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0
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1.8k
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Comment: C: Alignng RNAseq data for gene prediction
5.1 years ago by karthic ▴ 130
0
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0
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1.8k
views
Comment: C: Alignng RNAseq data for gene prediction
5.1 years ago by karthic ▴ 130
0
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1
reply
1.8k
views
Comment: C: Alignng RNAseq data for gene prediction
5.1 years ago by karthic ▴ 130
0
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1
reply
1.8k
views
Comment: C: Alignng RNAseq data for gene prediction
5.1 years ago by karthic ▴ 130
0
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0
replies
1.2k
views
Comment: C: Any new recommended protocol for gene prediction, if you have isoseq data??
5.1 years ago by karthic ▴ 130
1
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1
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1.2k
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Any new recommended protocol for gene prediction, if you have isoseq data??
isoseq pacbio gene prediction RNA-Seq
5.1 years ago by karthic ▴ 130
0
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1
reply
1.2k
views
Comment: C: Strand aware gff3 to protein fasta
5.4 years ago by karthic ▴ 130
0
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3
replies
1.2k
views
Strand aware gff3 to protein fasta
genome sequence
5.4 years ago by karthic ▴ 130
0
votes
1
reply
959
views
get summary from last alignments
alignment genome sequence
5.8 years ago by karthic ▴ 130
0
votes
0
replies
830
views
maf-swap: error: list index out of range
Assembly alignment genome software error
5.8 years ago by karthic ▴ 130
0
votes
0
replies
760
views
Unable to redirect mummer log to a file when called inside php
software error sequence next-gen alignment
updated 5.9 years ago by 20 • written 5.9 years ago by ▴ 130
0
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0
replies
1.1k
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Comment: C: Highly similar bacterial genomes
6.5 years ago by karthic ▴ 130
0
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2
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1.1k
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Highly similar bacterial genomes
genome bacterial genomes comparative study
6.6 years ago by karthic ▴ 130
0
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0
replies
4.1k
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Comment: C: Creating interaction network using cytoscape
6.9 years ago by karthic ▴ 130
0
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1
reply
1.5k
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Comment: C: What is Genome-sequencing?
6.9 years ago by karthic ▴ 130
0
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1
reply
2.5k
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Comment: C: target gene selection for miRNA
6.9 years ago by karthic ▴ 130
0
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0
replies
13k
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Comment: C: num_threads with blastn in blast 2.6.0+
6.9 years ago by karthic ▴ 130
0
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1
reply
2.5k
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Comment: C: target gene selection for miRNA
6.9 years ago by karthic ▴ 130
0
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1
reply
4.1k
views
Comment: C: Creating interaction network using cytoscape
6.9 years ago by karthic ▴ 130
1
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2
replies
13k
views
Comment: C: num_threads with blastn in blast 2.6.0+
6.9 years ago by karthic ▴ 130
0
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0
replies
4.8k
views
Answer: A: Coloring nodes by tip label attribute in figtree
7.0 years ago by karthic ▴ 130
0
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0
replies
1.4k
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Comment: C: Protein Structure and Sequence Assessment
7.0 years ago by karthic ▴ 130
0
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0
replies
1.3k
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Comment: C: How do I study a drug target (Thioredoxin Reductase) in Giardia using data from
7.0 years ago by karthic ▴ 130
0
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1
reply
5.0k
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Comment: C: So frustrated compiling necessary packages in a linux system
7.1 years ago by karthic ▴ 130
0
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2
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5.0k
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Comment: C: So frustrated compiling necessary packages in a linux system
7.1 years ago by karthic ▴ 130
0
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0
replies
1.1k
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Comment: C: how to find the target sequence for protein modeling?
7.1 years ago by karthic ▴ 130
0
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0
replies
1.7k
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Comment: C: Annotate coding sequences
7.1 years ago by karthic ▴ 130
0
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1
reply
1.7k
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Comment: C: Annotate coding sequences
7.1 years ago by karthic ▴ 130
0
votes
4
replies
1.7k
views
Annotate coding sequences
annotation sequence analysis
7.1 years ago by karthic ▴ 130
0
votes
1
reply
3.2k
views
Comment: C: compare two list of nucleotide sequences
7.1 years ago by karthic ▴ 130
0
votes
1
reply
3.2k
views
Comment: C: compare two list of nucleotide sequences
7.1 years ago by karthic ▴ 130
0
votes
0
replies
3.2k
views
Comment: C: compare two list of nucleotide sequences
7.1 years ago by karthic ▴ 130
4
votes
7
replies
3.2k
views
compare two list of nucleotide sequences
blast bowtie mummer sequence
updated 7.1 years ago by 22k • written 7.1 years ago by ▴ 130
0
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0
replies
1.5k
views
Comment: C: How to identify interactive partners that contact a specific residues in a prote
7.1 years ago by karthic ▴ 130
0
votes
0
replies
1.8k
views
Comment: C: How to predict receptors of a ligand?
7.1 years ago by karthic ▴ 130
0
votes
1
reply
5.5k
views
Comment: C: Aligning miRNA reads to miRbase
7.1 years ago by karthic ▴ 130
0
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0
replies
2.1k
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Comment: C: Masurca assembly denovo
7.1 years ago by karthic ▴ 130
0
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0
replies
1.2k
views
Generating read counts for my microRNA reads for a non model invertebrate
microrna htseq read count small rna
7.1 years ago by karthic ▴ 130
0
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1
reply
2.1k
views
Comment: C: Masurca assembly denovo
7.1 years ago by karthic ▴ 130
0
votes
0
replies
1.6k
views
Comment: C: For Generating PPI
7.1 years ago by karthic ▴ 130
0
votes
1
reply
8.1k
views
Comment: C: Remove dublicate lines basedon specific columns
updated 7.1 years ago by 45k • written 7.1 years ago by ▴ 130
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