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Showing :
questions
0
votes
4
replies
2.7k
views
How to do AMOVA on GBS data
SNP
genome
R
GBS
updated 2.9 years ago by
strive
• 0 • written 6.0 years ago by
jaafari.omid
▴ 80
0
votes
0
replies
688
views
How should we replace NAs from a genelight object?
R
glpca
adegenet
GBS
SNP
3.7 years ago by
jaafari.omid
▴ 80
0
votes
2
replies
1.3k
views
Fis, Ho and He calculation from Whole Genome Seq data
SNP
R
genome
3.6 years ago by
jaafari.omid
▴ 80
1
vote
5
replies
1.3k
views
Keep just chromosomes in a .bam file
genome
next-gen
assembly
snp
alignment
updated 4.8 years ago by
Ram
44k • written 4.8 years ago by
jaafari.omid
▴ 80
0
votes
0
replies
868
views
Allele frequency comparison between pairs of populations
SNP
next-gen
Allele frequency
software error
4.9 years ago by
jaafari.omid
▴ 80
0
votes
5
replies
3.4k
views
How to merge different BAM files?
SNP
next-gen
alignment
BAM
SAMtools
updated 5.2 years ago by
swbarnes2
14k • written 5.2 years ago by
jaafari.omid
▴ 80
0
votes
0
replies
1.1k
views
Fst Visulization from WGS data
R
SNP
next-gen
WGS
Fst
5.3 years ago by
jaafari.omid
▴ 80
2
votes
2
replies
1.2k
views
How should we merge the Chromosome and position columns of a vcf and or .map file to have the ID column without dots?
SNP
vcf
plink
updated 5.5 years ago by
WouterDeCoster
47k • written 5.5 years ago by
jaafari.omid
▴ 80
8
votes
6
replies
4.2k
views
rename samples in a vcf or plink file
snp
vcf
plink
updated 5.5 years ago by
WouterDeCoster
47k • written 5.5 years ago by
jaafari.omid
▴ 80
0
votes
0
replies
1.0k
views
Error in GWAS using GenABEL package
SNP
R
genome
next-gen
GWAS
5.6 years ago by
jaafari.omid
▴ 80
2
votes
6
replies
5.1k
views
Depth of coverage
snp
next-gen
genome
vcf
sequence
5.8 years ago by
jaafari.omid
▴ 80
4
votes
5
replies
2.8k
views
Allele frequency visualization
snp
R
stacks
vcftools
updated 19 months ago by
Ivvyray_genomics
• 0 • written 6.0 years ago by
jaafari.omid
▴ 80
1
vote
3
replies
1.8k
views
vcfR for Whole Genome Data
snp
genome
R
VCF
vcfR
5.8 years ago by
jaafari.omid
▴ 80
4
votes
14
replies
3.2k
views
VCF file filtration
snp
WGS
VCF
bcftools
vcftools
5.8 years ago by
jaafari.omid
▴ 80
6
votes
6
replies
6.0k
views
Calling SNPs using bcftools mpileup
snp
genome
bcftools-mpileup
WGS
SNP calling
updated 5.9 years ago by
finswimmer
16k • written 5.9 years ago by
jaafari.omid
▴ 80
1
vote
3
replies
1.6k
views
Manhattan plot from GBS data
SNP
updated 6.1 years ago by
Biostar
20 • written 6.1 years ago by
jaafari.omid
▴ 80
0
votes
4
replies
3.5k
views
manhattan plot with Fst values
SNP
software error
updated 6.1 years ago by
Ram
44k • written 6.1 years ago by
jaafari.omid
▴ 80
0
votes
6
replies
2.7k
views
How to perform VennDiagram from a VCF file?
SNP
genome
VennDiagram
updated 6.1 years ago by
shubhra.bhattacharya
▴ 140 • written 6.1 years ago by
jaafari.omid
▴ 80
0
votes
1
reply
1.1k
views
SNP Discovery Duration
SNP
updated 6.1 years ago by
Biostar
20 • written 6.8 years ago by
jaafari.omid
▴ 80
1
vote
7
replies
2.8k
views
Pool Whole Genome Sequencing
SNP
updated 6.4 years ago by
Kevin
▴ 640 • written 6.4 years ago by
jaafari.omid
▴ 80
3
votes
5
replies
3.5k
views
SNP-chip Pros and Cons
snp
updated 6.6 years ago by
Kevin Blighe
88k • written 6.6 years ago by
jaafari.omid
▴ 80
1
vote
5
replies
1.6k
views
Tags to snp
SNP
updated 6.8 years ago by
WouterDeCoster
47k • written 6.8 years ago by
jaafari.omid
▴ 80
2
votes
7
replies
2.6k
views
GC content in DNA sequnce
genome
6.9 years ago by
jaafari.omid
▴ 80
0
votes
0
replies
1.2k
views
Tag counting of GBS data
sequence
6.9 years ago by
jaafari.omid
▴ 80
24 results • Page
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