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Comment: Comment: Pca From Vcf Files
19 months ago by nataliagru1 ▴ 90
0
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1
reply
7.1k
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Comment: Comment: Getting Haplotypes from a VCF file
22 months ago by nataliagru1 ▴ 90
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0
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4.6k
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Comment: Comment: Multiple Psi-Blast Iterations From Command Line Using Remote Database
22 months ago by nataliagru1 ▴ 90
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0
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1.4k
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Comment: C: Error while reading mlc file from CODEML into ggtree/treeio in R
2.2 years ago by nataliagru1 ▴ 90
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1
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1.6k
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Comment: Comment: Identifying Private SNPs between multi sample vcf files.
21 months ago by nataliagru1 ▴ 90
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1
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9.3k
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Comment: C: Preparing a .genome file for snpEff
2.4 years ago by nataliagru1 ▴ 90
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1
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2.5k
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Comment: C: Clarification for using PSI-BLAST to generate a PSSM (am I doing it right?)
2.5 years ago by nataliagru1 ▴ 90
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0
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4.6k
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Comment: C: Multiple Psi-Blast Iterations From Command Line Using Remote Database
2.5 years ago by nataliagru1 ▴ 90
1
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3
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1.6k
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Identifying Private SNPs between multi sample vcf files.
vcftools bcftools vcf-compare bcftools isec
updated 18 months ago by ▴ 110 • written 2.6 years ago by ▴ 90
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1
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15k
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Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
2.7 years ago by nataliagru1 ▴ 90
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15k
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Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
2.7 years ago by nataliagru1 ▴ 90
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0
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15k
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Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
2.7 years ago by nataliagru1 ▴ 90
1
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1
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2.3k
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Comment: C: Count total number of Homozygous/Heterozygous SNPs from VCF file
2.9 years ago by nataliagru1 ▴ 90
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0
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2.3k
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Comment: C: Count total number of Homozygous/Heterozygous SNPs from VCF file
2.9 years ago by nataliagru1 ▴ 90
2
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4
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2.3k
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Count total number of Homozygous/Heterozygous SNPs from VCF file
SNP VCF allele
updated 2.9 years ago by 4.6k • written 2.9 years ago by ▴ 90
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0
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1.3k
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Comment: C: BLASTn output format start position larger than stop position
2.9 years ago by nataliagru1 ▴ 90
2
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3
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1.3k
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BLASTn output format start position larger than stop position
BLAST blastn blastn output blast outfmt 6
updated 2.9 years ago by 5.2k • written 2.9 years ago by ▴ 90
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0
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2.4k
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Comment: C: Remove sequences with (50% gaps) from MSA
2.9 years ago by nataliagru1 ▴ 90
9
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4
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2.4k
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Remove sequences with (50% gaps) from MSA
alignment sequence MSA Multple Sequence Alignment
updated 2.9 years ago by ★ 23k • written 2.9 years ago by ▴ 90
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0
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2.4k
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Comment: C: Remove sequences with (50% gaps) from MSA
2.9 years ago by nataliagru1 ▴ 90
0
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0
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849
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Is it acceptable to use ShapeIT for parasite genomes?
impute2 ShapeIT BEAGLE haplotype Phasing
updated 3.1 years ago by 20 • written 3.7 years ago by ▴ 90
1
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0
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7.0k
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Answer: A: PopGenome software: concatenating chromosomes and coalescent simulations
updated 3.4 years ago by 38k • written 3.6 years ago by ▴ 90
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1
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6.2k
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Comment: C: Vcftools Runs Of Homozygosity Option
3.6 years ago by nataliagru1 ▴ 90
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0
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2.8k
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Answer: A: formating for fineSTRUCTURE input
3.7 years ago by nataliagru1 ▴ 90
1
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1
reply
1.1k
views
Merge phased files from ShapeIT
ShapeIT Phasing
updated 3.7 years ago by 8.2k • written 3.7 years ago by ▴ 90
3
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0
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5.2k
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Answer: A: Generating genetic map file to use as input for shapeit
3.7 years ago by nataliagru1 ▴ 90
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0
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1.8k
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Comment: C: PopGenome tutorial files
3.7 years ago by nataliagru1 ▴ 90
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1
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5.2k
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Comment: C: Generating genetic map file to use as input for shapeit
3.7 years ago by nataliagru1 ▴ 90
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0
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1.9k
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Comment: C: Help Interpreting PopGenome sliding window analysis for nucleotide diversity?
3.8 years ago by nataliagru1 ▴ 90
1
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1
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1.8k
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Answer: A: PopGenome tutorial files
3.8 years ago by nataliagru1 ▴ 90
0
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1
reply
1.9k
views
Help Interpreting PopGenome sliding window analysis for nucleotide diversity?
PopGenome sliding.window.transform
3.8 years ago by nataliagru1 ▴ 90
0
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0
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787
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Can I run population genetics stats on my phased datasets?
R genome tajimas D population genetics
3.9 years ago by nataliagru1 ▴ 90
1
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0
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7.8k
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Comment: C: Substituting Snps On Reference Genome Assemblies
4.6 years ago by nataliagru1 ▴ 90
0
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0
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2.6k
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Comment: C: SNPhylo does not obey number of autosome chromosomes
4.6 years ago by nataliagru1 ▴ 90
0
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2
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7.8k
views
Comment: Comment: Substituting Snps On Reference Genome Assemblies
4.7 years ago by nataliagru1 ▴ 90
35 results • Page 1 of 1
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