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10
votes
9
replies
6.4k
views
Remove sequences with (50% gaps) from MSA
Multiple-Sequence-Alignment sequence MSA alignment
updated 2.3 years ago by ★ 30k • written 5.5 years ago by ▴ 90
0
votes
0
replies
46k
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Comment: Comment: Pca From Vcf Files
4.2 years ago by nataliagru1 ▴ 90
0
votes
1
reply
12k
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Comment: Comment: Getting Haplotypes from a VCF file
4.4 years ago by nataliagru1 ▴ 90
0
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0
replies
6.5k
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Comment: Comment: Multiple Psi-Blast Iterations From Command Line Using Remote Database
4.4 years ago by nataliagru1 ▴ 90
0
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0
replies
2.5k
views
Comment: C: Error while reading mlc file from CODEML into ggtree/treeio in R
4.8 years ago by nataliagru1 ▴ 90
0
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1
reply
3.4k
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Comment: Comment: Identifying Private SNPs between multi sample vcf files.
4.4 years ago by nataliagru1 ▴ 90
0
votes
1
reply
11k
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Comment: C: Preparing a .genome file for snpEff
5.0 years ago by nataliagru1 ▴ 90
0
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1
reply
5.8k
views
Comment: C: Clarification for using PSI-BLAST to generate a PSSM (am I doing it right?)
5.1 years ago by nataliagru1 ▴ 90
0
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0
replies
6.5k
views
Comment: C: Multiple Psi-Blast Iterations From Command Line Using Remote Database
5.1 years ago by nataliagru1 ▴ 90
1
vote
3
replies
3.4k
views
Identifying Private SNPs between multi sample vcf files.
vcftools bcftools vcf-compare bcftools isec
updated 4.1 years ago by ▴ 110 • written 5.2 years ago by ▴ 90
0
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1
reply
22k
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Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
5.3 years ago by nataliagru1 ▴ 90
0
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0
replies
22k
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Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
5.3 years ago by nataliagru1 ▴ 90
0
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0
replies
22k
views
Comment: C: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K valu
5.3 years ago by nataliagru1 ▴ 90
1
vote
1
reply
4.3k
views
Comment: C: Count total number of Homozygous/Heterozygous SNPs from VCF file
5.5 years ago by nataliagru1 ▴ 90
0
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0
replies
4.3k
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Comment: C: Count total number of Homozygous/Heterozygous SNPs from VCF file
5.5 years ago by nataliagru1 ▴ 90
2
votes
4
replies
4.3k
views
Count total number of Homozygous/Heterozygous SNPs from VCF file
SNP VCF allele
updated 5.5 years ago by 8.0k • written 5.5 years ago by ▴ 90
0
votes
0
replies
2.4k
views
Comment: C: BLASTn output format start position larger than stop position
5.5 years ago by nataliagru1 ▴ 90
2
votes
3
replies
2.4k
views
BLASTn output format start position larger than stop position
BLAST blastn blastn output blast outfmt 6
updated 5.5 years ago by 5.3k • written 5.5 years ago by ▴ 90
0
votes
0
replies
6.4k
views
Comment: C: Remove sequences with (50% gaps) from MSA
5.5 years ago by nataliagru1 ▴ 90
0
votes
0
replies
6.4k
views
Comment: C: Remove sequences with (50% gaps) from MSA
5.5 years ago by nataliagru1 ▴ 90
0
votes
0
replies
1.3k
views
Is it acceptable to use ShapeIT for parasite genomes?
impute2 ShapeIT BEAGLE haplotype Phasing
updated 5.7 years ago by 20 • written 6.3 years ago by ▴ 90
1
vote
0
replies
9.2k
views
Answer: A: PopGenome software: concatenating chromosomes and coalescent simulations
updated 6.0 years ago by 45k • written 6.3 years ago by ▴ 90
0
votes
1
reply
9.3k
views
Comment: C: Vcftools Runs Of Homozygosity Option
6.2 years ago by nataliagru1 ▴ 90
0
votes
0
replies
4.2k
views
Answer: A: formating for fineSTRUCTURE input
6.3 years ago by nataliagru1 ▴ 90
1
vote
1
reply
1.9k
views
Merge phased files from ShapeIT
ShapeIT Phasing
updated 6.3 years ago by 8.3k • written 6.3 years ago by ▴ 90
3
votes
0
replies
8.1k
views
Answer: A: Generating genetic map file to use as input for shapeit
6.3 years ago by nataliagru1 ▴ 90
0
votes
0
replies
2.8k
views
Comment: C: PopGenome tutorial files
6.3 years ago by nataliagru1 ▴ 90
0
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1
reply
8.1k
views
Comment: C: Generating genetic map file to use as input for shapeit
6.3 years ago by nataliagru1 ▴ 90
0
votes
0
replies
2.6k
views
Comment: C: Help Interpreting PopGenome sliding window analysis for nucleotide diversity?
6.4 years ago by nataliagru1 ▴ 90
1
vote
1
reply
2.8k
views
Answer: A: PopGenome tutorial files
6.4 years ago by nataliagru1 ▴ 90
0
votes
1
reply
2.6k
views
Help Interpreting PopGenome sliding window analysis for nucleotide diversity?
PopGenome sliding.window.transform
6.4 years ago by nataliagru1 ▴ 90
0
votes
0
replies
1.2k
views
Can I run population genetics stats on my phased datasets?
R genome tajimas D population genetics
6.6 years ago by nataliagru1 ▴ 90
1
vote
0
replies
11k
views
Comment: C: Substituting Snps On Reference Genome Assemblies
7.2 years ago by nataliagru1 ▴ 90
0
votes
0
replies
3.5k
views
Comment: C: SNPhylo does not obey number of autosome chromosomes
7.2 years ago by nataliagru1 ▴ 90
0
votes
2
replies
11k
views
Comment: Comment: Substituting Snps On Reference Genome Assemblies
7.3 years ago by nataliagru1 ▴ 90
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