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Comment: Comment: How to get specific information from a list of PDB ID and save all in a spreadsh
3.3 years ago by Shred ★ 1.6k
1
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1
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1.2k
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Comment: Comment: lncRNA analysis
3.3 years ago by Shred ★ 1.6k
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0
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819
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Comment: Comment: why Mutect2 calls some germline variants as somatic ones?
3.3 years ago by Shred ★ 1.6k
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0
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1.0k
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Comment: Comment: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
3.3 years ago by Shred ★ 1.6k
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0
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1.3k
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Answer: Answer: How to change gene coordinate in gtf file?
3.3 years ago by Shred ★ 1.6k
1
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0
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1.1k
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Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
3.3 years ago by Shred ★ 1.6k
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0
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2.9k
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Comment: Comment: featureCounts parameters
3.3 years ago by Shred ★ 1.6k
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0
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2.9k
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Comment: Comment: featureCounts parameters
3.3 years ago by Shred ★ 1.6k
1
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0
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5.2k
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Comment: Comment: Install required dependencies for GATK4 on remote server without root privilege
3.3 years ago by Shred ★ 1.6k
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1
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2.9k
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Comment: Comment: featureCounts parameters
3.3 years ago by Shred ★ 1.6k
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2
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2.9k
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Comment: Comment: featureCounts parameters
3.3 years ago by Shred ★ 1.6k
0
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1
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1.9k
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Comment: Comment: How can I bring similar columns from two different tables side by side?
3.3 years ago by Shred ★ 1.6k
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0
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2.4k
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Answer: Answer: Help with writing a loop for metaspades assembler (beginner)
3.3 years ago by Shred ★ 1.6k
1
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1
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5.6k
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Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
3.3 years ago by Shred ★ 1.6k
1
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1
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5.6k
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Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
3.3 years ago by Shred ★ 1.6k
1
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0
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5.6k
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Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
3.3 years ago by Shred ★ 1.6k
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0
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2.4k
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Answer: Answer: Converting A Long List of Ensembl IDs to Gene Symbols
3.3 years ago by Shred ★ 1.6k
1
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1
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752
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Answer: Answer: Extracting the mapped sequence of a certian gene
3.4 years ago by Shred ★ 1.6k
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0
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1.4k
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Comment: Comment: Gene Enrichment
3.4 years ago by Shred ★ 1.6k
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0
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1.4k
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Answer: Answer: Gene Enrichment
3.4 years ago by Shred ★ 1.6k
0
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0
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1.3k
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
3.4 years ago by Shred ★ 1.6k
0
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1
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1.3k
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
3.4 years ago by Shred ★ 1.6k
1
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2
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3.4k
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Answer: Answer: Can't convert dog ensembl IDs into gene names
3.5 years ago by Shred ★ 1.6k
0
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0
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991
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Comment: Comment: How does gexpr function in ballgown package calculate the gene expression level
3.5 years ago by Shred ★ 1.6k
3
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5
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3.5k
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Tool: Extend 3' UTR of a GTF file
annotation python RNA-Seq GTF
updated 24 months ago by 45k • written 4.7 years ago by ★ 1.6k
2
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0
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1.5k
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Answer: Answer: How to extract all sequences mapped to a transcript from Kallisto output
3.8 years ago by Shred ★ 1.6k
0
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0
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1.3k
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Comment: Comment: Error when opening CEL files in python
3.8 years ago by Shred ★ 1.6k
0
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1
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1.3k
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Comment: Comment: Cutoff value for shrunken logFC
3.8 years ago by Shred ★ 1.6k
0
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1
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1.4k
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Comment: Comment: Interpreting read coverage over gene body plot
3.8 years ago by Shred ★ 1.6k
0
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0
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1.5k
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Comment: Comment: Handle inflated log2FC while using interaction term in DESeq2
3.8 years ago by Shred ★ 1.6k
0
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3
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1.5k
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Handle inflated log2FC while using interaction term in DESeq2
RNAseq DESeq2 R
3.8 years ago by Shred ★ 1.6k
2
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0
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5.0k
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Answer: Answer: From amino acid sequence to DNA sequence using Reverse Translate software
3.8 years ago by Shred ★ 1.6k
1
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0
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5.0k
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Comment: Comment: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
3.9 years ago by Shred ★ 1.6k
2
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1
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5.0k
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Answer: Answer: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
3.9 years ago by Shred ★ 1.6k
1
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0
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1.8k
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Comment: Comment: Single-End to reduce cost for Differential Expression Analysis ?
3.9 years ago by Shred ★ 1.6k
1
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0
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9.1k
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Answer: Answer: understanding log2fold change of 0.31 and -0.25
3.9 years ago by Shred ★ 1.6k
2
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0
replies
695
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Stringtie on non model organism - how to best proceed for DE analysis?
Salmon Stringtie DESeq transcriptome rna-seq
3.9 years ago by Shred ★ 1.6k
0
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1
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1.2k
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Comment: Comment: CPM and FPKM for machine learning
4.0 years ago by Shred ★ 1.6k
0
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0
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3.2k
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Comment: Comment: Convert MSTRG gene IDs to real one?
4.0 years ago by Shred ★ 1.6k
0
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1
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3.2k
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Answer: Answer: Convert MSTRG gene IDs to real one?
4.0 years ago by Shred ★ 1.6k
2
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1
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1.7k
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Answer: Answer: HIV virus - GTF annonation
4.0 years ago by Shred ★ 1.6k
0
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0
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901
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Answer: Answer: read ids along with transcript ids
updated 4.0 years ago by 102k • written 4.0 years ago by ★ 1.6k
0
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0
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557
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Assemble 3'mRNAseq with standard RNAseq
stringtie RNAseq assembly 3mRNAseq
4.1 years ago by Shred ★ 1.6k
1
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0
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1.4k
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Answer: Answer: How to grep every row for the every value of a column?
4.2 years ago by Shred ★ 1.6k
1
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2
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1.4k
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Comment: Comment: How to grep every row for the every value of a column?
4.2 years ago by Shred ★ 1.6k
1
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0
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854
views
Comment: C: module vs miniconda in HPC
4.3 years ago by Shred ★ 1.6k
1
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1
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1.8k
views
Answer: A: How to install R in WinSCP server
4.3 years ago by Shred ★ 1.6k
3
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1
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1.8k
views
Comment: C: How to install R in WinSCP server
4.3 years ago by Shred ★ 1.6k
11
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11
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18k
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8 follow
Faster way to get GC content and Coverage from .fasta
sequencing next-gen genome bash fasta
3.4 years ago by Shred ★ 1.6k
1
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0
replies
3.4k
views
Comment: C: Pseudogenes in the human genome annotation
4.6 years ago by Shred ★ 1.6k
261 results • Page 4 of 6
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