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Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
2.6 years ago by Shred ★ 1.5k
1
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0
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4.7k
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Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
2.6 years ago by Shred ★ 1.5k
0
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0
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1.9k
views
Answer: Answer: Converting A Long List of Ensembl IDs to Gene Symbols
2.6 years ago by Shred ★ 1.5k
1
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1
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628
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Answer: Answer: Extracting the mapped sequence of a certian gene
2.6 years ago by Shred ★ 1.5k
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0
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1.0k
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Comment: Comment: Gene Enrichment
2.6 years ago by Shred ★ 1.5k
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0
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1.0k
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Answer: Answer: Gene Enrichment
2.6 years ago by Shred ★ 1.5k
0
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0
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1.1k
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
2.7 years ago by Shred ★ 1.5k
0
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1
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1.1k
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
2.7 years ago by Shred ★ 1.5k
0
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1
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2.6k
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Answer: Answer: Can't convert dog ensembl IDs into gene names
2.7 years ago by Shred ★ 1.5k
0
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0
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828
views
Comment: Comment: How does gexpr function in ballgown package calculate the gene expression level
2.7 years ago by Shred ★ 1.5k
3
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5
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3.0k
views
Tool: Extend 3' UTR of a GTF file
annotation python RNA-Seq GTF
updated 14 months ago by 44k • written 4.0 years ago by ★ 1.5k
2
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0
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1.3k
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Answer: Answer: How to extract all sequences mapped to a transcript from Kallisto output
3.0 years ago by Shred ★ 1.5k
0
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0
replies
1.1k
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Comment: Comment: Error when opening CEL files in python
3.0 years ago by Shred ★ 1.5k
0
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1
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1.0k
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Comment: Comment: Cutoff value for shrunken logFC
3.0 years ago by Shred ★ 1.5k
0
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1
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1.1k
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Comment: Comment: Interpreting read coverage over gene body plot
3.0 years ago by Shred ★ 1.5k
0
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0
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1.2k
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Comment: Comment: Handle inflated log2FC while using interaction term in DESeq2
3.0 years ago by Shred ★ 1.5k
0
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3
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1.2k
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Handle inflated log2FC while using interaction term in DESeq2
RNAseq DESeq2 R
3.0 years ago by Shred ★ 1.5k
2
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0
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3.8k
views
Answer: Answer: From amino acid sequence to DNA sequence using Reverse Translate software
3.1 years ago by Shred ★ 1.5k
1
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0
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4.2k
views
Comment: Comment: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
3.1 years ago by Shred ★ 1.5k
2
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1
reply
4.2k
views
Answer: Answer: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
3.1 years ago by Shred ★ 1.5k
1
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0
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1.4k
views
Comment: Comment: Single-End to reduce cost for Differential Expression Analysis ?
3.2 years ago by Shred ★ 1.5k
1
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0
replies
5.3k
views
Answer: Answer: understanding log2fold change of 0.31 and -0.25
3.2 years ago by Shred ★ 1.5k
2
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0
replies
572
views
Stringtie on non model organism - how to best proceed for DE analysis?
Salmon Stringtie DESeq transcriptome rna-seq
3.2 years ago by Shred ★ 1.5k
0
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1
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969
views
Comment: Comment: CPM and FPKM for machine learning
3.2 years ago by Shred ★ 1.5k
0
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0
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2.5k
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Comment: Comment: Convert MSTRG gene IDs to real one?
3.3 years ago by Shred ★ 1.5k
0
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1
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2.5k
views
Answer: Answer: Convert MSTRG gene IDs to real one?
3.3 years ago by Shred ★ 1.5k
2
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1
reply
1.3k
views
Answer: Answer: HIV virus - GTF annonation
3.3 years ago by Shred ★ 1.5k
0
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0
replies
780
views
Answer: Answer: read ids along with transcript ids
updated 3.3 years ago by 101k • written 3.3 years ago by ★ 1.5k
0
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0
replies
487
views
Assemble 3'mRNAseq with standard RNAseq
stringtie RNAseq assembly 3mRNAseq
3.3 years ago by Shred ★ 1.5k
1
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0
replies
1.2k
views
Answer: Answer: How to grep every row for the every value of a column?
3.5 years ago by Shred ★ 1.5k
1
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2
replies
1.2k
views
Comment: Comment: How to grep every row for the every value of a column?
3.5 years ago by Shred ★ 1.5k
1
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0
replies
689
views
Comment: C: module vs miniconda in HPC
3.5 years ago by Shred ★ 1.5k
1
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1
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1.5k
views
Answer: A: How to install R in WinSCP server
3.5 years ago by Shred ★ 1.5k
3
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1
reply
1.5k
views
Comment: C: How to install R in WinSCP server
3.5 years ago by Shred ★ 1.5k
11
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11
replies
17k
views
8 follow
Faster way to get GC content and Coverage from .fasta
sequencing next-gen genome bash fasta
2.6 years ago by Shred ★ 1.5k
1
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0
replies
2.7k
views
Comment: C: Pseudogenes in the human genome annotation
3.8 years ago by Shred ★ 1.5k
1
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1
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1.1k
views
Answer: A: Biopython - AttributeError: when downloading from genbank
3.9 years ago by Shred ★ 1.5k
0
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0
replies
1.3k
views
Comment: C: Find read distribution over every gene in RNA-seq
3.9 years ago by Shred ★ 1.5k
0
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1
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1.3k
views
Comment: C: Find read distribution over every gene in RNA-seq
3.9 years ago by Shred ★ 1.5k
2
votes
4
replies
1.3k
views
Find read distribution over every gene in RNA-seq
RNA-Seq python
updated 3.9 years ago by 101k • written 3.9 years ago by ★ 1.5k
0
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1
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2.4k
views
Comment: C: How to get the output on multiple files into one file in sbatch script?
3.9 years ago by Shred ★ 1.5k
0
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1
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1.8k
views
Comment: C: Difference in the counts generated using FeatureCounts and HTseq
3.9 years ago by Shred ★ 1.5k
0
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0
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2.8k
views
Comment: C: How to remove fasta headers in a multifasta file and write file name as a fasta
3.9 years ago by Shred ★ 1.5k
2
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1
reply
2.8k
views
Answer: A: How to remove fasta headers in a multifasta file and write file name as a fasta
3.9 years ago by Shred ★ 1.5k
0
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1
reply
3.0k
views
Comment: C: Extend 3' UTR of a GTF file
3.9 years ago by Shred ★ 1.5k
1
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0
replies
1.7k
views
Comment: C: How to retrieve sequences of genes list at a time from a fasta file
4.0 years ago by Shred ★ 1.5k
0
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0
replies
1.2k
views
Comment: C: Tips for Reading genotype files into python
4.0 years ago by Shred ★ 1.5k
0
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0
replies
1.2k
views
Comment: C: Tips for Reading genotype files into python
4.0 years ago by Shred ★ 1.5k
0
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1
reply
1.2k
views
Comment: C: Tips for Reading genotype files into python
4.0 years ago by Shred ★ 1.5k
1
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1
reply
2.1k
views
Comment: C: How much the sorting order of a gff file matters?
4.0 years ago by Shred ★ 1.5k
247 results • Page 4 of 5
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