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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
2.3 years ago by Shred ★ 1.4k
0
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1
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962
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
2.3 years ago by Shred ★ 1.4k
0
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1
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2.3k
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Answer: Answer: Can't convert dog ensembl IDs into gene names
2.3 years ago by Shred ★ 1.4k
0
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0
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747
views
Comment: Comment: How does gexpr function in ballgown package calculate the gene expression level
2.4 years ago by Shred ★ 1.4k
3
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5
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2.7k
views
Tool: Extend 3' UTR of a GTF file
annotation python RNA-Seq GTF
updated 10 months ago by 43k • written 3.6 years ago by ★ 1.4k
2
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0
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1.2k
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Answer: Answer: How to extract all sequences mapped to a transcript from Kallisto output
2.6 years ago by Shred ★ 1.4k
0
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0
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1.0k
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Comment: Comment: Error when opening CEL files in python
2.6 years ago by Shred ★ 1.4k
0
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1
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968
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Comment: Comment: Cutoff value for shrunken logFC
2.6 years ago by Shred ★ 1.4k
0
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1
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1.0k
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Comment: Comment: Interpreting read coverage over gene body plot
2.7 years ago by Shred ★ 1.4k
0
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0
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1.1k
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Comment: Comment: Handle inflated log2FC while using interaction term in DESeq2
2.7 years ago by Shred ★ 1.4k
0
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3
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1.1k
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Handle inflated log2FC while using interaction term in DESeq2
RNAseq DESeq2 R
2.7 years ago by Shred ★ 1.4k
2
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0
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3.4k
views
Answer: Answer: From amino acid sequence to DNA sequence using Reverse Translate software
2.7 years ago by Shred ★ 1.4k
1
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0
replies
3.8k
views
Comment: Comment: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
2.7 years ago by Shred ★ 1.4k
2
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1
reply
3.8k
views
Answer: Answer: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
2.7 years ago by Shred ★ 1.4k
1
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0
replies
1.9k
views
Tool: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
biomart annotation Ensembl
2.8 years ago by Shred ★ 1.4k
1
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0
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1.2k
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Comment: Comment: Single-End to reduce cost for Differential Expression Analysis ?
2.8 years ago by Shred ★ 1.4k
1
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0
replies
4.4k
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Answer: Answer: understanding log2fold change of 0.31 and -0.25
2.8 years ago by Shred ★ 1.4k
2
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0
replies
540
views
Stringtie on non model organism - how to best proceed for DE analysis?
Salmon Stringtie DESeq transcriptome rna-seq
2.8 years ago by Shred ★ 1.4k
0
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1
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889
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Comment: Comment: CPM and FPKM for machine learning
2.8 years ago by Shred ★ 1.4k
0
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0
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2.3k
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Comment: Comment: Convert MSTRG gene IDs to real one?
2.9 years ago by Shred ★ 1.4k
0
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1
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2.3k
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Answer: Answer: Convert MSTRG gene IDs to real one?
2.9 years ago by Shred ★ 1.4k
2
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1
reply
1.2k
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Answer: Answer: HIV virus - GTF annonation
2.9 years ago by Shred ★ 1.4k
0
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0
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731
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Answer: Answer: read ids along with transcript ids
updated 2.9 years ago by 100k • written 2.9 years ago by ★ 1.4k
0
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0
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452
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Assemble 3'mRNAseq with standard RNAseq
stringtie RNAseq assembly 3mRNAseq
3.0 years ago by Shred ★ 1.4k
1
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0
replies
1.1k
views
Answer: Answer: How to grep every row for the every value of a column?
3.1 years ago by Shred ★ 1.4k
1
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2
replies
1.1k
views
Comment: Comment: How to grep every row for the every value of a column?
3.1 years ago by Shred ★ 1.4k
1
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0
replies
628
views
Comment: C: module vs miniconda in HPC
3.2 years ago by Shred ★ 1.4k
1
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1
reply
1.4k
views
Answer: A: How to install R in WinSCP server
3.2 years ago by Shred ★ 1.4k
3
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1
reply
1.4k
views
Comment: C: How to install R in WinSCP server
3.2 years ago by Shred ★ 1.4k
11
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11
replies
17k
views
8 follow
Faster way to get GC content and Coverage from .fasta
sequencing next-gen genome bash fasta
2.3 years ago by Shred ★ 1.4k
1
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0
replies
2.5k
views
Comment: C: Pseudogenes in the human genome annotation
3.5 years ago by Shred ★ 1.4k
1
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1
reply
951
views
Answer: A: Biopython - AttributeError: when downloading from genbank
3.5 years ago by Shred ★ 1.4k
0
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0
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1.2k
views
Comment: C: Find read distribution over every gene in RNA-seq
3.5 years ago by Shred ★ 1.4k
0
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1
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1.2k
views
Comment: C: Find read distribution over every gene in RNA-seq
3.5 years ago by Shred ★ 1.4k
2
votes
4
replies
1.2k
views
Find read distribution over every gene in RNA-seq
RNA-Seq python
updated 3.5 years ago by 100k • written 3.5 years ago by ★ 1.4k
0
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1
reply
2.2k
views
Comment: C: How to get the output on multiple files into one file in sbatch script?
3.5 years ago by Shred ★ 1.4k
0
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1
reply
1.7k
views
Comment: C: Difference in the counts generated using FeatureCounts and HTseq
3.5 years ago by Shred ★ 1.4k
0
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0
replies
2.4k
views
Comment: C: How to remove fasta headers in a multifasta file and write file name as a fasta
3.5 years ago by Shred ★ 1.4k
2
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1
reply
2.4k
views
Answer: A: How to remove fasta headers in a multifasta file and write file name as a fasta
3.5 years ago by Shred ★ 1.4k
0
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1
reply
2.7k
views
Comment: C: Extend 3' UTR of a GTF file
3.6 years ago by Shred ★ 1.4k
1
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0
replies
1.5k
views
Comment: C: How to retrieve sequences of genes list at a time from a fasta file
3.6 years ago by Shred ★ 1.4k
0
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0
replies
1.1k
views
Comment: C: Tips for Reading genotype files into python
3.6 years ago by Shred ★ 1.4k
0
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0
replies
1.1k
views
Comment: C: Tips for Reading genotype files into python
3.6 years ago by Shred ★ 1.4k
0
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1
reply
1.1k
views
Comment: C: Tips for Reading genotype files into python
3.6 years ago by Shred ★ 1.4k
1
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1
reply
1.9k
views
Comment: C: How much the sorting order of a gff file matters?
3.7 years ago by Shred ★ 1.4k
0
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1
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1.9k
views
Comment: C: How much the sorting order of a gff file matters?
3.7 years ago by Shred ★ 1.4k
4
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7
replies
1.9k
views
How much the sorting order of a gff file matters?
gff RNA-Seq annotation
updated 3.7 years ago by 8.5k • written 3.7 years ago by ★ 1.4k
0
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2
replies
4.8k
views
Comment: C: Avoid download limit from NCBI entrez with Biopython using API key
5.2 years ago by Shred ★ 1.4k
0
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1
reply
7.0k
views
Comment: C: Remove duplicates in an extremely large text file
5.2 years ago by Shred ★ 1.4k
0
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1
reply
7.0k
views
Comment: C: Remove duplicates in an extremely large text file
5.2 years ago by Shred ★ 1.4k
242 results • Page 4 of 5
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