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Comment: Comment: BWA-MEM with an array of files
27 days ago by garcesj ▴ 50
2
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5
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633
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BWA-MEM with an array of files
alignment array BWA-MEM
updated 27 days ago by 5.2k • written 27 days ago by ▴ 50
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0
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19k
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Comment: Comment: Associating VDJ clonotyping data with scRNA-seq in Seurat
7 months ago by garcesj ▴ 50
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0
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2.0k
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Answer: Answer: Error in .Call2("C_solve_user_SEW", refwidths, start, end, width, translate.nega
10 months ago by garcesj ▴ 50
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0
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2.3k
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Comment: Comment: How to call CNV without normal samples
13 months ago by garcesj ▴ 50
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0
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46k
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Comment: Comment: Generating consensus sequence from bam file
14 months ago by garcesj ▴ 50
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0
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1.1k
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Comment: Comment: Mutation counts corrected by number of samples
17 months ago by garcesj ▴ 50
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1
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1.1k
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Comment: Comment: Mutation counts corrected by number of samples
17 months ago by garcesj ▴ 50
0
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4
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1.1k
views
Mutation counts corrected by number of samples
mutations WES genomics WGS
17 months ago by garcesj ▴ 50
0
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0
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744
views
How to create a haplotype map?
picard haplotype CrosscheckFingerprints
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 50
3
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6
replies
3.6k
views
Mutect2 is not detecting all available cores (multithreading)
exomes parallelization mutect2
updated 21 months ago by ▴ 50 • written 2.9 years ago by ▴ 50
3
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1
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3.6k
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Answer: Answer: Mutect2 is not detecting all available cores (multithreading)
2.8 years ago by garcesj ▴ 50
0
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1
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3.6k
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Comment: Comment: Mutect2 is not detecting all available cores (multithreading)
2.8 years ago by garcesj ▴ 50
1
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3
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2.0k
views
BCL compression
compression demultiplexing illumina BCL
updated 3.1 years ago by 103k • written 3.1 years ago by ▴ 50
0
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1
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2.6k
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Comment: Comment: Low mapping rate due to rRNA
3.4 years ago by garcesj ▴ 50
4
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6
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2.6k
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Low mapping rate due to rRNA
RNA-seq rRNA STAR
updated 3.4 years ago by ★ 1.9k • written 3.4 years ago by ▴ 50
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0
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2.6k
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Comment: Comment: Low mapping rate due to rRNA
3.4 years ago by garcesj ▴ 50
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0
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1.5k
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Comment: Comment: Combine full-length and 3` RNAseq, is it possible?
3.6 years ago by garcesj ▴ 50
0
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0
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1.0k
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Comment: Comment: Study of similarity (contrary to differential expression analysis)
3.7 years ago by garcesj ▴ 50
2
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2
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1.0k
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Study of similarity (contrary to differential expression analysis)
RNAseq expression analysis differential correlation
3.7 years ago by garcesj ▴ 50
3
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4
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1.5k
views
Combine full-length and 3` RNAseq, is it possible?
ExperimentalDesign RNAseq
3.6 years ago by garcesj ▴ 50
0
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5
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2.9k
views
Weird volcano plot
RNA-Seq volcano
updated 4.8 years ago by 20 • written 5.0 years ago by ▴ 50
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0
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2.9k
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Comment: C: Weird volcano plot
5.0 years ago by garcesj ▴ 50
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1
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2.9k
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Comment: C: Weird volcano plot
5.0 years ago by garcesj ▴ 50
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0
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4.9k
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Answer: A: clusterProfiler::enrichGO() is getting very slow
5.4 years ago by garcesj ▴ 50
0
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0
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4.0k
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Comment: C: Weird MA-plot (DESeq2)
5.6 years ago by garcesj ▴ 50
1
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1
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4.0k
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Comment: C: Weird MA-plot (DESeq2)
5.6 years ago by garcesj ▴ 50
3
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7
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4.0k
views
Weird MA-plot (DESeq2)
RNA-Seq DESeq2 confounders
updated 5.6 years ago by 12k • written 5.6 years ago by ▴ 50
0
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1
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4.0k
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Comment: C: Weird MA-plot (DESeq2)
5.6 years ago by garcesj ▴ 50
1
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2
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1.5k
views
Multiple N bases in RNAseq
RNA-Seq Illumina
5.8 years ago by garcesj ▴ 50
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0
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1.5k
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Comment: C: Multiple N bases in RNAseq
5.8 years ago by garcesj ▴ 50
0
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0
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6.0k
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Comment: C: PyClone without copy number data
6.4 years ago by garcesj ▴ 50
0
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0
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905
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Activator o repressor protein in a pathway
pathway
6.4 years ago by garcesj ▴ 50
1
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1
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2.1k
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Comment: C: GISTIC2, some missing samples during the process
6.5 years ago by garcesj ▴ 50
2
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3
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2.1k
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GISTIC2, some missing samples during the process
gistic2
6.5 years ago by garcesj ▴ 50
0
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0
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2.1k
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Answer: A: Rawcopy copy number analysis
6.7 years ago by garcesj ▴ 50
0
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1
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3.0k
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Comment: C: CDF file for Cytoscan arrays
6.7 years ago by garcesj ▴ 50
0
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3
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3.0k
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CDF file for Cytoscan arrays
array Cystoscan CDF
6.7 years ago by garcesj ▴ 50
0
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0
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3.3k
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Comment: C: cdf environment for cytoscan hd array
6.7 years ago by garcesj ▴ 50
0
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0
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3.6k
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Comment: C: How to find CNV or CN state information from rawcopy output ?
6.7 years ago by garcesj ▴ 50
0
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1
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4.7k
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Comment: C: High Kmer Content in middle of the read
7.1 years ago by garcesj ▴ 50
0
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1
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4.7k
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Answer: A: High Kmer Content in middle of the read
7.1 years ago by garcesj ▴ 50
0
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0
replies
5.2k
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Answer: A: Varscan2 copynumber 'Parsing Exception' error
7.1 years ago by garcesj ▴ 50
0
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0
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6.6k
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Comment: C: Why different tSNE plot with Seurat and Monocle if they'r using the same R packa
7.4 years ago by garcesj ▴ 50
2
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3
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6.6k
views
Why different tSNE plot with Seurat and Monocle if they'r using the same R package?
single-cell tsne R Seurat monocle
updated 7.4 years ago by ▴ 110 • written 7.4 years ago by ▴ 50
0
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2
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4.3k
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Comment: C: Create a custom exome .genome for IGV
7.7 years ago by garcesj ▴ 50
0
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1
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4.3k
views
Comment: C: Create a custom exome .genome for IGV
7.7 years ago by garcesj ▴ 50
0
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8
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4.3k
views
Create a custom exome .genome for IGV
IGV exome sequencing WES
updated 7.7 years ago by 35k • written 7.7 years ago by ▴ 50
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