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Comment: C: Getting huge size of CNV region from CNV-kit with hybrid data.
3.7 years ago by Makplus T ▴ 100
0
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2
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871
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Getting huge size of CNV region from CNV-kit with hybrid data.
CNV WES CNVkit
3.7 years ago by Makplus T ▴ 100
6
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6
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2.7k
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How to explain that mutations called by Mutect2 are inconsistent with what I saw in iGV?
iGV GATK Mutect2 mutation
updated 3.7 years ago by ▴ 40 • written 3.8 years ago by ▴ 100
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0
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4.3k
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Comment: C: Confused about the AF tag in VCF from samtools/bcftools mpileup
3.8 years ago by Makplus T ▴ 100
1
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0
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4.3k
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Comment: C: Confused about the AF tag in VCF from samtools/bcftools mpileup
3.8 years ago by Makplus T ▴ 100
4
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4
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4.3k
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Confused about the AF tag in VCF from samtools/bcftools mpileup
variants AF VCF samtools GATK
updated 3.8 years ago by ★ 2.2k • written 3.8 years ago by ▴ 100
0
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1
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2.7k
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Comment: C: How to explain that mutations called by Mutect2 are inconsistent with what I saw
3.8 years ago by Makplus T ▴ 100
3
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5
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6.4k
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Some symbols share the same ensembl ID in org.Hs.eg.db but not in ensembl website, how to deal with it?
org.Hs.eg.db ensembl gene symbol
updated 4.0 years ago by • 0 • written 6.1 years ago by ▴ 100
0
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0
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769
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Comment: C: will C-base re-synthesize during PCR in Bisulfite methylation sequence
4.5 years ago by Makplus T ▴ 100
0
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1
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769
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Comment: C: will C-base re-synthesize during PCR in Bisulfite methylation sequence
4.5 years ago by Makplus T ▴ 100
0
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4
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769
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will C-base re-synthesize during PCR in Bisulfite methylation sequence
bisulfite methylation
4.5 years ago by Makplus T ▴ 100
2
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0
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4.0k
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Answer: A: Volcano plot: why is there big FC with big p-values?
4.5 years ago by Makplus T ▴ 100
2
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0
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4.4k
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Answer: A: Determine adapter sequence in RNA-seq samples
4.5 years ago by Makplus T ▴ 100
0
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2
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1.1k
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Why DP and GT info in my VCF file are inconsistent?
GATK VCF format
updated 4.6 years ago by 20 • written 4.6 years ago by ▴ 100
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0
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1.1k
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Comment: C: Why DP and GT info in my VCF file are inconsistent?
4.6 years ago by Makplus T ▴ 100
0
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0
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1.3k
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What is the different if I call germline SNP/Indel with mutect and HaplotypeCaller?
GATK mutect HaplotypeCaller.
4.7 years ago by Makplus T ▴ 100
1
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0
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39k
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Comment: C: How Can I Get The Human Chromosome Centromere Position And Chromosome Length In
4.9 years ago by Makplus T ▴ 100
0
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1
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1.8k
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Comment: C: Are there any way to find DMR with the data in TCGA methylation level3?
5.5 years ago by Makplus T ▴ 100
0
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4
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1.8k
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Are there any way to find DMR with the data in TCGA methylation level3?
TCGA Methylation 450K DMR
updated 5.5 years ago by 87k • written 5.6 years ago by ▴ 100
5
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1
reply
9.9k
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should FASTA files be sorted before indexed with SAMtools?
SAMtools FASTA sort index
updated 5.6 years ago by 16k • written 5.6 years ago by ▴ 100
1
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1
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6.4k
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Comment: C: Some symbols share the same ensembl ID in org.Hs.eg.db but not in ensembl websit
6.1 years ago by Makplus T ▴ 100
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