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questions
0
votes
2
replies
883
views
Getting huge size of CNV region from CNV-kit with hybrid data.
CNV
WES
CNVkit
3.7 years ago by
Makplus T
▴ 100
6
votes
6
replies
2.8k
views
How to explain that mutations called by Mutect2 are inconsistent with what I saw in iGV?
iGV
GATK
Mutect2
mutation
updated 3.8 years ago by
davidben
▴ 40 • written 3.8 years ago by
Makplus T
▴ 100
4
votes
4
replies
4.3k
views
Confused about the AF tag in VCF from samtools/bcftools mpileup
variants
AF
VCF
samtools
GATK
updated 3.8 years ago by
Renesh
★ 2.2k • written 3.8 years ago by
Makplus T
▴ 100
3
votes
5
replies
6.4k
views
Some symbols share the same ensembl ID in org.Hs.eg.db but not in ensembl website, how to deal with it?
org.Hs.eg.db
ensembl
gene symbol
updated 4.1 years ago by
18756176916
• 0 • written 6.1 years ago by
Makplus T
▴ 100
0
votes
4
replies
785
views
will C-base re-synthesize during PCR in Bisulfite methylation sequence
bisulfite
methylation
4.5 years ago by
Makplus T
▴ 100
0
votes
2
replies
1.1k
views
Why DP and GT info in my VCF file are inconsistent?
GATK
VCF
format
updated 4.6 years ago by
Biostar
20 • written 4.7 years ago by
Makplus T
▴ 100
0
votes
0
replies
1.3k
views
What is the different if I call germline SNP/Indel with mutect and HaplotypeCaller?
GATK
mutect
HaplotypeCaller.
4.8 years ago by
Makplus T
▴ 100
0
votes
4
replies
1.8k
views
Are there any way to find DMR with the data in TCGA methylation level3?
TCGA
Methylation
450K
DMR
updated 5.5 years ago by
Kevin Blighe
87k • written 5.6 years ago by
Makplus T
▴ 100
6
votes
1
reply
10k
views
should FASTA files be sorted before indexed with SAMtools?
SAMtools
FASTA
sort
index
updated 5.6 years ago by
finswimmer
16k • written 5.6 years ago by
Makplus T
▴ 100
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