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178
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reference-free assembly error assessment tools
assembly
4 months ago by lagartija ▴ 160
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1
reply
537
views
Answer: Answer: Benchmarking RNASeq Variant Calling Pipeline (Short Reads)
4 months ago by lagartija ▴ 160
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0
replies
228
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Proteomics : imputation of missing values in all replicates
proteomics
6 months ago by lagartija ▴ 160
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0
replies
1.1k
views
Answer: Answer: Bioinformatics: what do you think of it in the next 20 years?
9 months ago by lagartija ▴ 160
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0
replies
444
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Rooting a tree based on taxonomy of species
phylogeny
2.2 years ago by lagartija ▴ 160
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0
replies
868
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Comment: Comment: topGO : compare 2 distinct groups
2.3 years ago by lagartija ▴ 160
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0
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1.1k
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Answer: Answer: AGP file ENA submission error
2.3 years ago by lagartija ▴ 160
1
vote
1
reply
578
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blastn of complement or reverse strand
blast
updated 2.4 years ago by 101k • written 2.4 years ago by ▴ 160
3
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4
replies
1.5k
views
act comparaison of 2 genomes - problem with the blast output
assembly software error
updated 3.0 years ago by • 0 • written 6.3 years ago by ▴ 160
0
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2
replies
868
views
topGO : compare 2 distinct groups
topGO
2.3 years ago by lagartija ▴ 160
1
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2
replies
597
views
Cytoscape - knowing and exporting layouts
Cytoscape
3.3 years ago by lagartija ▴ 160
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0
replies
1.4k
views
Comment: Comment: Understanding plot_heatmap results (phyloseq)
3.3 years ago by lagartija ▴ 160
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0
replies
6.5k
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Comment: Comment: CheckM and strain heterogeneity
3.5 years ago by lagartija ▴ 160
0
votes
0
replies
620
views
Translate evolutionary model for MrBayes
phylogeny
updated 3.6 years ago by 20 • written 3.6 years ago by ▴ 160
1
vote
1
reply
1.2k
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cytoscape : edge weighted layout
cytoscape
updated 3.6 years ago by ▴ 620 • written 3.6 years ago by ▴ 160
0
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1
reply
4.6k
views
Comment: C: How to remove illumina universal adapter
3.6 years ago by lagartija ▴ 160
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0
replies
1.1k
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Comment: C: How to calculate dN/dS for all ortholog group ?
3.6 years ago by lagartija ▴ 160
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0
replies
27k
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Comment: C: devtools Installation error in R (version 3.5.3)?
3.7 years ago by lagartija ▴ 160
1
vote
1
reply
1.1k
views
Metagenomics - Functional analysis
metagenomics megan
3.8 years ago by lagartija ▴ 160
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0
replies
1.3k
views
Comment: C: optimal number of clusters from distance matrix input
3.9 years ago by lagartija ▴ 160
1
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2
replies
1.3k
views
optimal number of clusters from distance matrix input
clustering R
updated 3.9 years ago by 88k • written 3.9 years ago by ▴ 160
0
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0
replies
736
views
Comment: C: Problem renaming headers in multi fasta file using certain scripts
3.9 years ago by lagartija ▴ 160
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0
replies
1.3k
views
Comment: C: Error when running Metabat 2
3.9 years ago by lagartija ▴ 160
1
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1
reply
1.4k
views
Answer: A: How to use sed command on multiple files
3.9 years ago by lagartija ▴ 160
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0
replies
1.4k
views
Comment: C: How to use sed command on multiple files
3.9 years ago by lagartija ▴ 160
0
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0
replies
1.1k
views
Comment: C: viral metagenomics classification: MINIMUM number of viral reads (cutoff) to con
3.9 years ago by lagartija ▴ 160
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0
replies
3.1k
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Answer: A: hmm without realigning
3.9 years ago by lagartija ▴ 160
0
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1
reply
914
views
Comment: C: Which bacterial genes are the oldest?
4.1 years ago by lagartija ▴ 160
1
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0
replies
2.5k
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Answer: A: How to determine contig taxonomy from metagenome?
4.1 years ago by lagartija ▴ 160
0
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0
replies
2.7k
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Comment: C: How to do alpha and beta diversity with shougun metagenome data
4.1 years ago by lagartija ▴ 160
0
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0
replies
834
views
Comment: C: Detecting Chimeric Contigs
4.1 years ago by lagartija ▴ 160
0
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2
replies
1.1k
views
Comment: C: How to find out if contig size is limited by repeats
updated 4.1 years ago by 21k • written 4.1 years ago by ▴ 160
0
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1
reply
1.1k
views
Comment: C: How to find out if contig size is limited by repeats
4.1 years ago by lagartija ▴ 160
3
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6
replies
1.1k
views
How to find out if contig size is limited by repeats
Assembly metagenomics
4.1 years ago by lagartija ▴ 160
2
votes
0
replies
17k
views
Comment: C: Subset Bam File According To List Of Contigs
4.4 years ago by lagartija ▴ 160
0
votes
0
replies
599
views
Download IMG or other large metagenomic datasets
metagenomics
4.4 years ago by lagartija ▴ 160
0
votes
2
replies
738
views
hmmsearch on global metagenomic datasets
metagenomics
updated 4.4 years ago by 20 • written 4.4 years ago by ▴ 160
0
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0
replies
738
views
Comment: C: hmmsearch on global metagenomic datasets
4.4 years ago by lagartija ▴ 160
0
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0
replies
1.5k
views
Answer: A: Polish the genome first or Fill the gaps in the genome first for genome assembli
4.4 years ago by lagartija ▴ 160
0
votes
0
replies
1.8k
views
Answer: A: Generating Neighbour Joining Tree from Sequences
4.5 years ago by lagartija ▴ 160
1
vote
1
reply
967
views
Comment: C: New insights from old data?
4.5 years ago by lagartija ▴ 160
0
votes
1
reply
967
views
Comment: C: New insights from old data?
4.5 years ago by lagartija ▴ 160
0
votes
0
replies
967
views
Comment: C: New insights from old data?
4.5 years ago by lagartija ▴ 160
0
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0
replies
965
views
Comment: C: small representative database
4.5 years ago by lagartija ▴ 160
1
vote
1
reply
967
views
Comment: C: New insights from old data?
4.5 years ago by lagartija ▴ 160
1
vote
3
replies
965
views
small representative database
taxonomy data genomes proteomes
updated 4.5 years ago by ★ 28k • written 4.5 years ago by ▴ 160
0
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0
replies
1.8k
views
Comment: C: blasting a fasta file with many, many contigs via command line
4.5 years ago by lagartija ▴ 160
0
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0
replies
618
views
Comment: C: Arrange Table for orthogroup categorization
4.7 years ago by lagartija ▴ 160
0
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0
replies
1.8k
views
Answer: A: How to extract all ONT reads that connect/overlaps two or more contigs ?
4.7 years ago by lagartija ▴ 160
0
votes
0
replies
766
views
Comment: C: B2G missing GO terms
4.8 years ago by lagartija ▴ 160
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