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2
votes
3
replies
2.1k
views
Submitting to GEO: 10x Fixed RNA profiling (Single Cell Gene Expression Flex)
rna-seq
updated 16 months ago by ▴ 10 • written 16 months ago by ▴ 170
0
votes
1
reply
2.1k
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Answer: Answer: Submitting to GEO: 10x Fixed RNA profiling (Single Cell Gene Expression Flex)
16 months ago by psm ▴ 170
0
votes
0
replies
8.3k
views
Comment: Comment: How to download FASTQ files from the European Nucleotide Archive (ENA) to use th
16 months ago by psm ▴ 170
1
vote
2
replies
3.0k
views
Comment: Comment: Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or
2.1 years ago by psm ▴ 170
0
votes
1
reply
3.0k
views
Comment: Comment: Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or
2.1 years ago by psm ▴ 170
6
votes
7
replies
3.0k
views
Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or both?
scRNA-seq
updated 7 months ago by ▴ 40 • written 2.1 years ago by ▴ 170
2
votes
2
replies
2.8k
views
Seurat: Log fold change and p value when control expression is 0
RNA-seq DGE
updated 2.3 years ago by 4.8k • written 2.3 years ago by ▴ 170
0
votes
0
replies
1.8k
views
Comment: Comment: Choice for statistical test (and R package)
2.3 years ago by psm ▴ 170
0
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1
reply
1.8k
views
Comment: Comment: Choice for statistical test (and R package)
2.3 years ago by psm ▴ 170
4
votes
4
replies
1.8k
views
Choice for statistical test (and R package)
RNA-seq DGE
2.3 years ago by psm ▴ 170
0
votes
1
reply
3.7k
views
Comment: Comment: How much RAM for scRNAseq 200K cells?
2.9 years ago by psm ▴ 170
3
votes
4
replies
3.7k
views
How much RAM for scRNAseq 200K cells?
cells Single RNA-seq cell
updated 2.9 years ago by 4.2k • written 2.9 years ago by ▴ 170
0
votes
1
reply
861
views
Close correlation between differentially-expressed genes
rna-seq
updated 2.9 years ago by ▴ 170 • written 2.9 years ago by ▴ 170
0
votes
0
replies
4.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.6 years ago by psm ▴ 170
0
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0
replies
4.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.6 years ago by psm ▴ 170
0
votes
0
replies
4.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.6 years ago by psm ▴ 170
0
votes
2
replies
4.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.6 years ago by psm ▴ 170
0
votes
1
reply
4.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.6 years ago by psm ▴ 170
0
votes
2
replies
4.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.6 years ago by psm ▴ 170
0
votes
0
replies
7.8k
views
Comment: Comment: Enrichment score of ssGSEA
3.6 years ago by psm ▴ 170
0
votes
1
reply
4.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.6 years ago by psm ▴ 170
8
votes
19
replies
4.7k
views
Multiple correlations RNAseq data - correction for multiple testing?
statistics rnaseq correlation
3.6 years ago by psm ▴ 170
0
votes
1
reply
4.7k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
3.6 years ago by psm ▴ 170
1
vote
0
replies
754
views
Differential gene expression analysis on microarray dataset with files from two chips
differential expression microarray
3.9 years ago by psm ▴ 170
0
votes
0
replies
3.5k
views
Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
4.7 years ago by psm ▴ 170
0
votes
0
replies
3.5k
views
Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
4.7 years ago by psm ▴ 170
3
votes
4
replies
3.5k
views
Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
RNA-Seq
updated 4.7 years ago by 89k • written 4.7 years ago by ▴ 170
6
votes
2
replies
5.6k
views
DGE analysis with more than 2+ groups: Compare to reference or compare to all other groups?
RNA-Seq
updated 4.7 years ago by 89k • written 4.7 years ago by ▴ 170
0
votes
0
replies
736
views
Comment: C: Software/Package to automatically annotate genes? Do any exist?
4.7 years ago by psm ▴ 170
0
votes
2
replies
736
views
Software/Package to automatically annotate genes? Do any exist?
RNA-Seq
4.7 years ago by psm ▴ 170
1
vote
0
replies
3.0k
views
Comment: C: ChipQC doesn't run
5.0 years ago by psm ▴ 170
0
votes
0
replies
4.8k
views
Comment: C: Seurat Violin Plot shows counts LESS than 0?
5.2 years ago by psm ▴ 170
1
vote
2
replies
4.8k
views
Seurat Violin Plot shows counts LESS than 0?
RNA-Seq
updated 5.2 years ago by 6.5k • written 5.2 years ago by ▴ 170
0
votes
0
replies
3.5k
views
Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
5.2 years ago by psm ▴ 170
0
votes
1
reply
3.5k
views
Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
5.2 years ago by psm ▴ 170
5
votes
6
replies
3.5k
views
Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons, or both?
RNA-Seq
updated 4.2 years ago by • 0 • written 5.2 years ago by ▴ 170
0
votes
2
replies
3.8k
views
Comment: C: Is the ssGSEA enrichment score affected by other samples in the analysis group?
5.2 years ago by psm ▴ 170
1
vote
0
replies
3.5k
views
Comment: C: GSVA kernels: Gaussian or Poisson?
5.2 years ago by psm ▴ 170
6
votes
2
replies
3.5k
views
GSVA kernels: Gaussian or Poisson?
RNA-Seq
updated 5.3 years ago by 89k • written 5.3 years ago by ▴ 170
1
vote
5
replies
3.8k
views
Is the ssGSEA enrichment score affected by other samples in the analysis group?
ssGSEA R RNA-Seq
updated 4.4 years ago by 13k • written 5.3 years ago by ▴ 170
0
votes
1
reply
7.8k
views
Answer: A: Enrichment score of ssGSEA
5.3 years ago by psm ▴ 170
0
votes
0
replies
2.8k
views
Comment: A: single cell sequencing data doublets removal tools selection
5.3 years ago by psm ▴ 170
0
votes
1
reply
7.8k
views
Comment: C: hisat2-build indexing produces more than 8 output files
7.0 years ago by psm ▴ 170
0
votes
0
replies
6.5k
views
Comment: C: ENSEMBL annotation file for quantification: which file to use?
7.0 years ago by psm ▴ 170
0
votes
0
replies
6.5k
views
Comment: C: ENSEMBL annotation file for quantification: which file to use?
7.0 years ago by psm ▴ 170
0
votes
0
replies
6.5k
views
Comment: C: ENSEMBL annotation file for quantification: which file to use?
7.0 years ago by psm ▴ 170
13
votes
8
replies
6.5k
views
ENSEMBL annotation file for quantification: which file to use?
RNA-Seq ensembl annotation
updated 7.0 years ago by ★ 2.4k • written 7.0 years ago by ▴ 170
0
votes
1
reply
7.8k
views
Comment: C: hisat2-build indexing produces more than 8 output files
7.1 years ago by psm ▴ 170
3
votes
0
replies
2.9k
views
HISAT2: Extracting splice sites and exons for index
RNA-Seq alignment
7.1 years ago by psm ▴ 170
0
votes
0
replies
7.6k
views
Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
7.1 years ago by psm ▴ 170
53 results • Page 1 of 2
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