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Comment: Comment: How much RAM for scRNAseq 200K cells?
6 months ago by psm ▴ 100
2
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4
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728
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How much RAM for scRNAseq 200K cells?
cells Single RNA-seq cell
updated 6 months ago by 3.6k • written 6 months ago by ▴ 100
0
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1
reply
322
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Close correlation between differentially-expressed genes
rna-seq
updated 7 months ago by ▴ 120 • written 7 months ago by ▴ 100
0
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0
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1.8k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
15 months ago by psm ▴ 100
0
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0
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1.8k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
15 months ago by psm ▴ 100
0
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0
replies
1.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
15 months ago by psm ▴ 100
0
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2
replies
1.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
15 months ago by psm ▴ 100
0
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1
reply
1.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
15 months ago by psm ▴ 100
0
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2
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1.8k
views
Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
15 months ago by psm ▴ 100
0
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0
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5.4k
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Comment: Comment: Enrichment score of ssGSEA
15 months ago by psm ▴ 100
0
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1
reply
1.8k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
15 months ago by psm ▴ 100
8
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19
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1.8k
views
Multiple correlations RNAseq data - correction for multiple testing?
statistics rnaseq correlation
15 months ago by psm ▴ 100
0
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1
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1.8k
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Comment: Comment: Multiple correlations RNAseq data - correction for multiple testing?
15 months ago by psm ▴ 100
1
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0
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363
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Differential gene expression analysis on microarray dataset with files from two chips
differential expression microarray
18 months ago by psm ▴ 100
0
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0
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1.5k
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Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
2.3 years ago by psm ▴ 100
0
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0
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1.5k
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Comment: C: Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
2.3 years ago by psm ▴ 100
3
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4
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1.5k
views
Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
RNA-Seq
updated 2.3 years ago by 72k • written 2.3 years ago by ▴ 100
4
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2
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1.8k
views
DGE analysis with more than 2+ groups: Compare to reference or compare to all other groups?
RNA-Seq
updated 2.3 years ago by 72k • written 2.3 years ago by ▴ 100
0
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0
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331
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Comment: C: Software/Package to automatically annotate genes? Do any exist?
2.4 years ago by psm ▴ 100
0
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2
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331
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Software/Package to automatically annotate genes? Do any exist?
RNA-Seq
2.4 years ago by psm ▴ 100
1
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0
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1.9k
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Comment: C: ChipQC doesn't run
2.7 years ago by psm ▴ 100
0
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0
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2.8k
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Comment: C: Seurat Violin Plot shows counts LESS than 0?
2.8 years ago by psm ▴ 100
1
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2
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2.8k
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Seurat Violin Plot shows counts LESS than 0?
RNA-Seq
updated 2.8 years ago by 5.3k • written 2.8 years ago by ▴ 100
0
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0
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1.8k
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Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
2.9 years ago by psm ▴ 100
0
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1
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1.8k
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Comment: C: Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons,
2.9 years ago by psm ▴ 100
2
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6
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1.8k
views
Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons, or both?
RNA-Seq
updated 23 months ago by • 0 • written 2.9 years ago by ▴ 100
0
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2
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2.0k
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Comment: C: Is the ssGSEA enrichment score affected by other samples in the analysis group?
2.9 years ago by psm ▴ 100
1
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0
replies
1.7k
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Comment: C: GSVA kernels: Gaussian or Poisson?
2.9 years ago by psm ▴ 100
3
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2
replies
1.7k
views
GSVA kernels: Gaussian or Poisson?
RNA-Seq
updated 2.9 years ago by 85k • written 2.9 years ago by ▴ 100
1
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5
replies
2.0k
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Is the ssGSEA enrichment score affected by other samples in the analysis group?
ssGSEA R RNA-Seq
updated 2.0 years ago by 13k • written 2.9 years ago by ▴ 100
0
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1
reply
5.4k
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Answer: A: Enrichment score of ssGSEA
2.9 years ago by psm ▴ 100
0
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0
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1.8k
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Comment: A: single cell sequencing data doublets removal tools selection
3.0 years ago by psm ▴ 100
0
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1
reply
5.2k
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Comment: C: hisat2-build indexing produces more than 8 output files
4.7 years ago by psm ▴ 100
0
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0
replies
3.9k
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Comment: C: ENSEMBL annotation file for quantification: which file to use?
4.7 years ago by psm ▴ 100
0
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0
replies
3.9k
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Comment: C: ENSEMBL annotation file for quantification: which file to use?
4.7 years ago by psm ▴ 100
0
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0
replies
3.9k
views
Comment: C: ENSEMBL annotation file for quantification: which file to use?
4.7 years ago by psm ▴ 100
13
votes
8
replies
3.9k
views
ENSEMBL annotation file for quantification: which file to use?
RNA-Seq ensembl annotation
updated 4.7 years ago by ★ 2.2k • written 4.7 years ago by ▴ 100
0
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1
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5.2k
views
Comment: C: hisat2-build indexing produces more than 8 output files
4.7 years ago by psm ▴ 100
2
votes
0
replies
2.4k
views
HISAT2: Extracting splice sites and exons for index
RNA-Seq alignment
4.7 years ago by psm ▴ 100
0
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0
replies
4.4k
views
Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
4.7 years ago by psm ▴ 100
0
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1
reply
4.4k
views
Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
4.7 years ago by psm ▴ 100
6
votes
9
replies
4.4k
views
RNA-seq: How to know which paired reads come from the same original fragment?
RNA-Seq Assembly
updated 23 months ago by • 0 • written 5.0 years ago by ▴ 100
1
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1
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4.4k
views
Comment: C: RNA-seq: How to know which paired reads come from the same original fragment?
5.0 years ago by psm ▴ 100
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