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Answer:
Answer: Nextflow runs Successfully but output files are empty. How to debug?
16 months ago by
rohitsatyam102
▴ 780
0
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0
replies
1.1k
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Comment:
Comment: Nextflow runs Successfully but output files are empty. How to debug?
16 months ago by
rohitsatyam102
▴ 780
0
votes
1
reply
1.1k
views
Comment:
Comment: Nextflow runs Successfully but output files are empty. How to debug?
16 months ago by
rohitsatyam102
▴ 780
1
vote
1
reply
1.8k
views
Comment:
Comment: Fastqc in nextflow run only one pair of fastq.gz file and not on all Fastq files
16 months ago by
rohitsatyam102
▴ 780
3
votes
3
replies
1.8k
views
Fastqc in nextflow run only one pair of fastq.gz file and not on all Fastq files
nextflow
fastqc
updated 16 months ago by
ATpoint
78k • written 16 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
1.8k
views
Comment:
Comment: Using shell command in Nextflow DSL=2 for BWA mem aligner
16 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
1.8k
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Comment:
Comment: Using shell command in Nextflow DSL=2 for BWA mem aligner
16 months ago by
rohitsatyam102
▴ 780
3
votes
5
replies
1.8k
views
Using shell command in Nextflow DSL=2 for BWA mem aligner
nextflow
alihnment
align
bwa
16 months ago by
rohitsatyam102
▴ 780
0
votes
1
reply
1.8k
views
Comment:
Comment: Using shell command in Nextflow DSL=2 for BWA mem aligner
16 months ago by
rohitsatyam102
▴ 780
0
votes
1
reply
771
views
Comment:
Comment: Online training - Introduction to Nextflow
16 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
3.4k
views
Comment:
Comment: Tutorial for analysing gpr files of microarray
16 months ago by
rohitsatyam102
▴ 780
3
votes
1
reply
470
views
GO Term Analysis in scRNASeq data with low number of genes expressed
scrnaseq
Seurat
updated 17 months ago by
mark.ziemann
★ 1.8k • written 17 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
2.6k
views
Comment:
Comment: Big difference in estimated duplicate reads between forward and reverse of paire
17 months ago by
rohitsatyam102
▴ 780
0
votes
1
reply
2.6k
views
Comment:
Comment: Big difference in estimated duplicate reads between forward and reverse of paire
17 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
1.6k
views
Comment:
Comment: How to use SingleR for annotating single-cell transcriptomics dataset with our o
19 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
2.2k
views
Comment:
Comment: How to select nFeature parameter of SelectIntegrationFeatures function in Seurat
20 months ago by
rohitsatyam102
▴ 780
5
votes
0
replies
2.5k
views
Forum:
Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat
scrnaseq
20 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
6.7k
views
Comment:
Comment: SCTransform prior or after merging samples into one object?
20 months ago by
rohitsatyam102
▴ 780
0
votes
1
reply
10k
views
Comment:
Comment: FindAllMarkers pct1 and pct2
20 months ago by
rohitsatyam102
▴ 780
0
votes
1
reply
10k
views
Comment:
Comment: FindAllMarkers pct1 and pct2
20 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
2.4k
views
Comment:
Comment: Running fastq_screen on your data
20 months ago by
rohitsatyam102
▴ 780
3
votes
2
replies
2.4k
views
Tutorial:
Running fastq_screen on your data
fastqscreen
20 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
712
views
Interpreting the Jackstraw plot of Seurat
genomics
seurat
plot
scrnaseq
21 months ago by
rohitsatyam102
▴ 780
0
votes
1
reply
2.2k
views
Comment:
Comment: How to select nFeature parameter of SelectIntegrationFeatures function in Seurat
21 months ago by
rohitsatyam102
▴ 780
4
votes
4
replies
2.2k
views
How to select nFeature parameter of SelectIntegrationFeatures function in Seurat
scrnaseq
Seurat
20 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
1.9k
views
Comment:
Comment: Mitochondrial percentage in Seurat
21 months ago by
rohitsatyam102
▴ 780
2
votes
0
replies
668
views
Forum:
How to download multiple .gz files from Ensembl Protists database
wget
protist
ensembl
21 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
410
views
How to update gff/gtf files after using Mauve Config Mover
assembly
genome
Mauve
21 months ago by
rohitsatyam102
▴ 780
0
votes
0
replies
8.8k
views
Comment:
Comment: Mauve Contig Mover
2.1 years ago by
rohitsatyam102
▴ 780
0
votes
1
reply
1.1k
views
Comment:
Comment: Quick questions about Alevin and AlevinQC
2.2 years ago by
rohitsatyam102
▴ 780
2
votes
3
replies
1.1k
views
Quick questions about Alevin and AlevinQC
alevinqc
alevin
updated 2.2 years ago by
ATpoint
78k • written 2.2 years ago by
rohitsatyam102
▴ 780
0
votes
0
replies
3.7k
views
Comment:
Comment: Is the ENSEMBL FTP down?
2.2 years ago by
rohitsatyam102
▴ 780
0
votes
0
replies
3.7k
views
Comment:
Comment: Is the ENSEMBL FTP down?
2.2 years ago by
rohitsatyam102
▴ 780
0
votes
2
replies
3.7k
views
Comment:
Comment: Is the ENSEMBL FTP down?
2.2 years ago by
rohitsatyam102
▴ 780
0
votes
0
replies
22k
views
Answer:
Answer: htseq-counts output merge into one matrix ??
2.3 years ago by
rohitsatyam102
▴ 780
2
votes
2
replies
711
views
How to use RINalyzer plugin in cytoscape
cytoscape
RINalyzer
networks
updated 2.4 years ago by
Scooter
▴ 180 • written 2.4 years ago by
rohitsatyam102
▴ 780
0
votes
0
replies
1.7k
views
Comment:
Comment: Prediction error with libsvm
2.4 years ago by
rohitsatyam102
▴ 780
0
votes
1
reply
12k
views
Comment:
Comment: Confusion about FindMarkers(), FindVariableFeatures(), RunTSNE(), and RunUMAP()
2.6 years ago by
rohitsatyam102
▴ 780
0
votes
0
replies
1.2k
views
Comment:
Comment: Parsing Dates from Multiple Websites
2.6 years ago by
rohitsatyam102
▴ 780
51
votes
14
replies
79k
views
10 follow
Tutorial:
Using R in Conda
R
updated 8 months ago by
Ram
41k • written 3.4 years ago by
rohitsatyam102
▴ 780
0
votes
1
reply
1.2k
views
Comment:
Comment: Parsing Dates from Multiple Websites
2.6 years ago by
rohitsatyam102
▴ 780
0
votes
0
replies
1.2k
views
Comment:
Comment: Parsing Dates from Multiple Websites
2.6 years ago by
rohitsatyam102
▴ 780
0
votes
0
replies
79k
views
Comment:
Comment: Using R in Conda
2.6 years ago by
rohitsatyam102
▴ 780
7
votes
3
replies
79k
views
Answer:
Answer: Using R in Conda
updated 2.6 years ago by
Ram
41k • written 2.6 years ago by
rohitsatyam102
▴ 780
2
votes
8
replies
1.2k
views
Parsing Dates from Multiple Websites
R
updated 2.6 years ago by
cpad0112
21k • written 2.6 years ago by
rohitsatyam102
▴ 780
0
votes
1
reply
1.6k
views
Which VCF's to use for BQSR in GATK
GATK
BQSR
next-gen-sequencing
updated 8 months ago by
Ram
41k • written 3.8 years ago by
rohitsatyam102
▴ 780
0
votes
0
replies
8.2k
views
Comment:
C: Retrieve mutation position and ID for a mutation in hgvs format
2.9 years ago by
rohitsatyam102
▴ 780
0
votes
0
replies
1.6k
views
Comment:
C: What does minoverlap = 1L means?
2.9 years ago by
rohitsatyam102
▴ 780
7
votes
1
reply
6.6k
views
Forum:
What are chromatin states ?
genome
ChIP-Seq
updated 6 months ago by
Ram
41k • written 4.1 years ago by
rohitsatyam102
▴ 780
0
votes
0
replies
608
views
MNAse-Seq Dataset for Different Cancer Types
Cancer
bigwig
Mnaseseq
updated 8 months ago by
Ram
41k • written 3.0 years ago by
rohitsatyam102
▴ 780
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