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Comment: Comment: Find barcodes in fasta file
23 months ago by pablo ▴ 300
0
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0
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1000
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Comment: Comment: Method to fill N gaps with de novo assembly
23 months ago by pablo ▴ 300
0
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0
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1000
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Comment: Comment: Method to fill N gaps with de novo assembly
24 months ago by pablo ▴ 300
0
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0
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1000
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Comment: Comment: Method to fill N gaps with de novo assembly
24 months ago by pablo ▴ 300
0
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6
replies
1000
views
Method to fill N gaps with de novo assembly
assembly
23 months ago by pablo ▴ 300
0
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0
replies
338
views
Best practice to find break point in fusion genes
fusiongenes isoseq breakpoint pacbio rnaseq
2.2 years ago by pablo ▴ 300
0
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1
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836
views
Comment: Comment: Splicing window on fasta sequence
2.3 years ago by pablo ▴ 300
3
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4
replies
836
views
Splicing window on fasta sequence
biopython python
updated 2.3 years ago by 21k • written 2.3 years ago by ▴ 300
0
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1
reply
560
views
Check if a nucleotide matches in CDS (from GenBank)
Genbank
updated 2.5 years ago by 15k • written 2.5 years ago by ▴ 300
0
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0
replies
1.0k
views
Annotation with eggNOG-mapper
prodigal annotation prokaryote eggNOG-mapper
2.5 years ago by pablo ▴ 300
0
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1
reply
1.6k
views
Running RepeatMasker with RepeatModeler database
repeatmasker repeatmodeler
updated 2.6 years ago by 8.6k • written 2.6 years ago by ▴ 300
1
vote
1
reply
2.3k
views
k-mer distribution to estimate the heterozygosity of my assembly
kmer Assembly pacbio purge_dups
updated 3.0 years ago by ▴ 220 • written 3.4 years ago by ▴ 300
0
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0
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1.1k
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Comment: Comment: Blast Output with only one line
3.0 years ago by pablo ▴ 300
1
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4
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1.1k
views
Blast Output with only one line
blast
3.0 years ago by pablo ▴ 300
0
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2
replies
1.3k
views
Comment: C: Running purge_dups on a hybrid assembly (optical mapping + reads)
3.3 years ago by pablo ▴ 300
0
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1
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1.3k
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Comment: C: Running purge_dups on a hybrid assembly (optical mapping + reads)
3.3 years ago by pablo ▴ 300
3
votes
5
replies
1.3k
views
Running purge_dups on a hybrid assembly (optical mapping + reads)
pacbio purge_dups Assembly bionano
updated 8 months ago by 6.4k • written 3.3 years ago by ▴ 300
0
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1
reply
1.2k
views
Answer: A: De novo alignement with smrttools
3.3 years ago by pablo ▴ 300
1
vote
5
replies
1.2k
views
De novo alignement with smrttools
denovo alignment smrttools
3.3 years ago by pablo ▴ 300
0
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1
reply
1.2k
views
Comment: C: How to determine coverage cutoffs in k-mer distribution
3.4 years ago by pablo ▴ 300
5
votes
3
replies
1.2k
views
How to determine coverage cutoffs in k-mer distribution
kmer distribution kmer Assembly
updated 3.4 years ago by ★ 27k • written 3.4 years ago by ▴ 300
0
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0
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1.2k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
3.5 years ago by pablo ▴ 300
1
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0
replies
1.2k
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Comment: C: Difference of transcripts between my GFF file and the IGV results
3.5 years ago by pablo ▴ 300
1
vote
9
replies
1.2k
views
Difference of transcripts between my GFF file and the IGV results
gff igv transcripts
3.5 years ago by pablo ▴ 300
0
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1
reply
1.2k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
3.5 years ago by pablo ▴ 300
0
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1
reply
1.2k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
3.5 years ago by pablo ▴ 300
0
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1
reply
691
views
Transcript sequence aligns twice on the reference
alignement bam
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 300
0
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0
replies
2.0k
views
Comment: C: Problem with vcf format to run gatk FastaAlternateReferenceMaker
3.5 years ago by pablo ▴ 300
0
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3
replies
2.0k
views
Problem with vcf format to run gatk FastaAlternateReferenceMaker
vcf gatk phasing
3.5 years ago by pablo ▴ 300
1
vote
1
reply
1.1k
views
Interpreting results of a dotplot
dotplot dgenies
3.7 years ago by pablo ▴ 300
0
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1
reply
3.8k
views
Comment: C: Using HiCanu assembler on PacBio Hifi reads
3.7 years ago by pablo ▴ 300
0
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7
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3.8k
views
Using HiCanu assembler on PacBio Hifi reads
hicanu pacbio ccs
3.7 years ago by pablo ▴ 300
0
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0
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3.8k
views
Comment: C: Using HiCanu assembler on PacBio Hifi reads
3.7 years ago by pablo ▴ 300
0
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2
replies
852
views
Different number of sequences on the same file between two tools
sequencing counts genometools pacbio bam
updated 3.7 years ago by 20 • written 3.9 years ago by ▴ 300
0
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0
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1.1k
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Comment: C: Improving PacBio Assembly with Illumina reads
3.8 years ago by pablo ▴ 300
0
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2
replies
1.1k
views
Improving PacBio Assembly with Illumina reads
Assembly pacbio illumina
3.8 years ago by pablo ▴ 300
0
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0
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1.6k
views
Comment: C: Get statistics about an alignment done by Hifiasm
3.8 years ago by pablo ▴ 300
0
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3
replies
1.6k
views
Get statistics about an alignment done by Hifiasm
hifiasm alignment
3.8 years ago by pablo ▴ 300
0
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1
reply
2.8k
views
Comment: C: Fastq files with only " ! " score
3.8 years ago by pablo ▴ 300
2
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5
replies
2.8k
views
Fastq files with only " ! " score
fastq samtools
updated 3.8 years ago by 142k • written 3.8 years ago by ▴ 300
0
votes
1
reply
911
views
Time to align full-length transcripts against a reference
pacbio RNA-Seq assembly canu hifiasm
updated 3.8 years ago by 6.4k • written 3.8 years ago by ▴ 300
0
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0
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1.6k
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Comment: C: Different barcodes on demultiplexed data
3.8 years ago by pablo ▴ 300
0
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1
reply
1.6k
views
Comment: C: Different barcodes on demultiplexed data
3.8 years ago by pablo ▴ 300
0
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0
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1.6k
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Comment: C: Different barcodes on demultiplexed data
3.8 years ago by pablo ▴ 300
0
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1
reply
1.6k
views
Comment: A: Different barcodes on demultiplexed data
3.8 years ago by pablo ▴ 300
1
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7
replies
1.6k
views
Different barcodes on demultiplexed data
pacbio demultiplexing barcodes sequel
3.8 years ago by pablo ▴ 300
0
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1
reply
1.5k
views
Comment: C: Difference SMRTlink / SMRTtools
3.8 years ago by pablo ▴ 300
2
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3
replies
1.5k
views
Difference SMRTlink / SMRTtools
pacbio smrttools smrtlink
updated 3.8 years ago by 142k • written 3.8 years ago by ▴ 300
0
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0
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852
views
Comment: C: Different number of sequences on the same file between two tools
3.9 years ago by pablo ▴ 300
0
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1
reply
944
views
Comment: C: Share FastQC results on GitLab
3.9 years ago by pablo ▴ 300
210 results • Page 2 of 5
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