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Comment: Comment: Extract reads from BAM file with known variant
3.0 years ago by pablo ▴ 350
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6.2k
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Comment: Comment: Extract reads from BAM file with known variant
3.0 years ago by pablo ▴ 350
0
votes
1
reply
6.2k
views
Comment: Comment: Extract reads from BAM file with known variant
3.0 years ago by pablo ▴ 350
0
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1
reply
6.2k
views
Comment: Comment: Extract reads from BAM file with known variant
3.0 years ago by pablo ▴ 350
0
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2
replies
6.2k
views
Comment: Comment: Extract reads from BAM file with known variant
3.0 years ago by pablo ▴ 350
0
votes
1
reply
6.2k
views
Comment: Comment: Extract reads from BAM file with known variant
3.0 years ago by pablo ▴ 350
0
votes
1
reply
6.2k
views
Comment: Comment: Extract reads from BAM file with known variant
3.0 years ago by pablo ▴ 350
0
votes
0
replies
6.2k
views
Comment: Comment: Extract reads from BAM file with known variant
3.0 years ago by pablo ▴ 350
0
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0
replies
2.2k
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Comment: Comment: Find barcodes in fasta file
3.1 years ago by pablo ▴ 350
0
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1
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2.2k
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Comment: Comment: Find barcodes in fasta file
3.1 years ago by pablo ▴ 350
3
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7
replies
2.2k
views
Find barcodes in fasta file
fasta biopython
3.1 years ago by pablo ▴ 350
0
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1
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2.2k
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Comment: Comment: Find barcodes in fasta file
3.1 years ago by pablo ▴ 350
0
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0
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1.6k
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Comment: Comment: Method to fill N gaps with de novo assembly
3.1 years ago by pablo ▴ 350
0
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0
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1.6k
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Comment: Comment: Method to fill N gaps with de novo assembly
3.1 years ago by pablo ▴ 350
0
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0
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1.6k
views
Comment: Comment: Method to fill N gaps with de novo assembly
3.1 years ago by pablo ▴ 350
0
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6
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1.6k
views
Method to fill N gaps with de novo assembly
assembly
3.1 years ago by pablo ▴ 350
0
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0
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470
views
Best practice to find break point in fusion genes
fusiongenes isoseq breakpoint pacbio rnaseq
3.4 years ago by pablo ▴ 350
0
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1
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1.2k
views
Comment: Comment: Splicing window on fasta sequence
3.5 years ago by pablo ▴ 350
3
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4
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1.2k
views
Splicing window on fasta sequence
biopython python
updated 3.5 years ago by 21k • written 3.5 years ago by ▴ 350
0
votes
1
reply
727
views
Check if a nucleotide matches in CDS (from GenBank)
Genbank
updated 3.7 years ago by 15k • written 3.7 years ago by ▴ 350
0
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0
replies
1.5k
views
Annotation with eggNOG-mapper
prodigal annotation prokaryote eggNOG-mapper
3.7 years ago by pablo ▴ 350
0
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1
reply
2.4k
views
Running RepeatMasker with RepeatModeler database
repeatmasker repeatmodeler
updated 3.7 years ago by 9.2k • written 3.7 years ago by ▴ 350
1
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1
reply
3.0k
views
k-mer distribution to estimate the heterozygosity of my assembly
kmer Assembly pacbio purge_dups
updated 4.1 years ago by ▴ 230 • written 4.6 years ago by ▴ 350
0
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0
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1.5k
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Comment: Comment: Blast Output with only one line
4.2 years ago by pablo ▴ 350
1
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4
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1.5k
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Blast Output with only one line
blast
4.2 years ago by pablo ▴ 350
0
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2
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1.8k
views
Comment: C: Running purge_dups on a hybrid assembly (optical mapping + reads)
4.4 years ago by pablo ▴ 350
0
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1
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1.8k
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Comment: C: Running purge_dups on a hybrid assembly (optical mapping + reads)
4.4 years ago by pablo ▴ 350
3
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5
replies
1.8k
views
Running purge_dups on a hybrid assembly (optical mapping + reads)
pacbio purge_dups Assembly bionano
updated 22 months ago by 7.7k • written 4.4 years ago by ▴ 350
0
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1
reply
1.6k
views
Answer: A: De novo alignement with smrttools
4.5 years ago by pablo ▴ 350
1
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5
replies
1.6k
views
De novo alignement with smrttools
denovo alignment smrttools
4.5 years ago by pablo ▴ 350
0
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1
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1.7k
views
Comment: C: How to determine coverage cutoffs in k-mer distribution
4.6 years ago by pablo ▴ 350
5
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3
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1.7k
views
How to determine coverage cutoffs in k-mer distribution
kmer distribution kmer Assembly
updated 4.6 years ago by ★ 29k • written 4.6 years ago by ▴ 350
0
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0
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1.7k
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Comment: C: Difference of transcripts between my GFF file and the IGV results
4.7 years ago by pablo ▴ 350
1
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0
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1.7k
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Comment: C: Difference of transcripts between my GFF file and the IGV results
4.7 years ago by pablo ▴ 350
1
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9
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1.7k
views
Difference of transcripts between my GFF file and the IGV results
gff igv transcripts
4.7 years ago by pablo ▴ 350
0
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1
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1.7k
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Comment: C: Difference of transcripts between my GFF file and the IGV results
4.7 years ago by pablo ▴ 350
0
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1
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1.7k
views
Comment: C: Difference of transcripts between my GFF file and the IGV results
4.7 years ago by pablo ▴ 350
0
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1
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971
views
Transcript sequence aligns twice on the reference
alignement bam
updated 4.7 years ago by 13k • written 4.7 years ago by ▴ 350
0
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0
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2.5k
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Comment: C: Problem with vcf format to run gatk FastaAlternateReferenceMaker
4.7 years ago by pablo ▴ 350
0
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3
replies
2.5k
views
Problem with vcf format to run gatk FastaAlternateReferenceMaker
vcf gatk phasing
4.7 years ago by pablo ▴ 350
1
vote
1
reply
1.3k
views
Interpreting results of a dotplot
dotplot dgenies
4.8 years ago by pablo ▴ 350
0
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1
reply
5.0k
views
Comment: C: Using HiCanu assembler on PacBio Hifi reads
4.8 years ago by pablo ▴ 350
0
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7
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5.0k
views
Using HiCanu assembler on PacBio Hifi reads
hicanu pacbio ccs
4.9 years ago by pablo ▴ 350
0
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0
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5.0k
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Comment: C: Using HiCanu assembler on PacBio Hifi reads
4.9 years ago by pablo ▴ 350
0
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2
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1.1k
views
Different number of sequences on the same file between two tools
sequencing counts genometools pacbio bam
updated 4.9 years ago by 20 • written 5.0 years ago by ▴ 350
0
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0
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1.3k
views
Comment: C: Improving PacBio Assembly with Illumina reads
4.9 years ago by pablo ▴ 350
0
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2
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1.3k
views
Improving PacBio Assembly with Illumina reads
Assembly pacbio illumina
4.9 years ago by pablo ▴ 350
0
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0
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1.9k
views
Comment: C: Get statistics about an alignment done by Hifiasm
4.9 years ago by pablo ▴ 350
0
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3
replies
1.9k
views
Get statistics about an alignment done by Hifiasm
hifiasm alignment
4.9 years ago by pablo ▴ 350
0
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1
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3.6k
views
Comment: C: Fastq files with only " ! " score
4.9 years ago by pablo ▴ 350
221 results • Page 2 of 5
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