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Comment: Comment: SE reads in fr-firststrand, fr-secondstrand
15 days ago by JourneyToAbyss ▴ 250
1
vote
3
replies
596
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Why little difference in RNAseq alignment when flipping forward and reverse strand with paired end reads
mRNA rna-seq bowtie alignment
updated 16 days ago by 15k • written 17 days ago by ▴ 250
0
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1
reply
404
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Merge 1000 Genome gentotype AND genotype likelihood VCFs together
VCF LiftoverVcf Merge
updated 8 weeks ago by ▴ 630 • written 8 weeks ago by ▴ 250
0
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0
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760
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Comment: Comment: Featurecounts: Unexpected number of features
9 weeks ago by JourneyToAbyss ▴ 250
0
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1
reply
760
views
Comment: Comment: Featurecounts: Unexpected number of features
9 weeks ago by JourneyToAbyss ▴ 250
0
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0
replies
760
views
Comment: Comment: Featurecounts: Unexpected number of features
9 weeks ago by JourneyToAbyss ▴ 250
0
votes
1
reply
760
views
Comment: Comment: Featurecounts: Unexpected number of features
9 weeks ago by JourneyToAbyss ▴ 250
1
vote
8
replies
760
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Featurecounts: Unexpected number of features
featurecounts
9 weeks ago by JourneyToAbyss ▴ 250
2
votes
1
reply
1.8k
views
Comment: Comment: LD Pruning in GWAS
10 months ago by JourneyToAbyss ▴ 250
0
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1
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1.3k
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
17 months ago by JourneyToAbyss ▴ 250
0
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7
replies
1.3k
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1000 Genome: Cause of duplicate variants with different genotypes
CrossMap 1000Genome 1000G
updated 17 months ago by ▴ 630 • written 17 months ago by ▴ 250
0
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1
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1.4k
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Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
17 months ago by JourneyToAbyss ▴ 250
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1
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1.4k
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Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
17 months ago by JourneyToAbyss ▴ 250
0
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6
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1.4k
views
Normal number of variants to lose during liftover: GRCh38 to hg19
liftover 1000genome CrossMap
updated 17 months ago by ▴ 630 • written 17 months ago by ▴ 250
3
votes
2
replies
2.8k
views
Extracting Residuals from Differential Expression Model
statistics residuals limma
updated 22 months ago by ★ 8.2k • written 6.0 years ago by ▴ 250
4
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4
replies
1.9k
views
Understanding Used Assembly: Why aren't authors specific about patch version?
1000genomes GRCh38 gnomad assembly freeze
updated 24 months ago by 152k • written 2.1 years ago by ▴ 250
0
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3
replies
1.6k
views
Help finding GTEx v8 Imputed Genotypes
SHAPEIT GTEx
updated 12 weeks ago by • 0 • written 3.0 years ago by ▴ 250
0
votes
1
reply
890
views
Affymetrix Probes and Multiple Alignments
Affymetrix HG-U133A 2.0 Microarray
updated 4.9 years ago by 89k • written 4.9 years ago by ▴ 250
0
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0
replies
1.3k
views
MatrixEQTL: Inconsistent Results to lm()
MatrixEQTL lm missing
5.5 years ago by JourneyToAbyss ▴ 250
3
votes
1
reply
1.8k
views
Duplicate and Different Annotations using biomaRt
biomaRt biobase ensembl annotations
updated 5.7 years ago by 89k • written 5.7 years ago by ▴ 250
0
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0
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1.0k
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MatrixEQTL: Pre-processing steps
matrixEQTL
5.9 years ago by JourneyToAbyss ▴ 250
3
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1
reply
1.5k
views
GTOOL and Plink: Single Dosage Probabilities
plink gtool
6.1 years ago by JourneyToAbyss ▴ 250
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0
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1.8k
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Comment: C: How are plink's hardcalls calculated?
6.1 years ago by JourneyToAbyss ▴ 250
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1
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1.8k
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Comment: A: How are plink's hardcalls calculated?
6.1 years ago by JourneyToAbyss ▴ 250
8
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4
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1.8k
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How are plink's hardcalls calculated?
plink
6.1 years ago by JourneyToAbyss ▴ 250
4
votes
1
reply
2.4k
views
Unable to query specific ensembl ID through biomaRt (R) or mygene (Python)
ensembl mygene biomart gene symbols ensembl ID
6.4 years ago by JourneyToAbyss ▴ 250
3
votes
2
replies
2.4k
views
Difficulty Converting lncRNA gene symbol to Ensembl
gene symbol ensembl agilent microarray
updated 6.4 years ago by 12k • written 6.4 years ago by ▴ 250
1
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1
reply
1.2k
views
Differential Expression of lncRNAs in Brain --- Can a database aid my search?
lncRNA differential expression database
updated 6.4 years ago by ▴ 710 • written 6.4 years ago by ▴ 250
41
votes
6
replies
37k
views
Plink: Understanding LD Clumping vs Pruning
Plink eQTL LD Clumping Pruning
updated 6.7 years ago by 89k • written 6.7 years ago by ▴ 250
2
votes
1
reply
1.5k
views
Plink: Proper file format for linkage disequilibirum
plink
updated 6.8 years ago by 45k • written 6.8 years ago by ▴ 250
1
vote
1
reply
1.1k
views
Updating INDEL SNP positions
SNP
updated 6.9 years ago by 16k • written 6.9 years ago by ▴ 250
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