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0
replies
8.7k
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Comment:
Comment: SE reads in fr-firststrand, fr-secondstrand
3 months ago by
JourneyToAbyss
▴ 250
1
vote
3
replies
828
views
Why little difference in RNAseq alignment when flipping forward and reverse strand with paired end reads
mRNA
rna-seq
bowtie
alignment
updated 3 months ago by
swbarnes2
15k • written 3 months ago by
JourneyToAbyss
▴ 250
0
votes
1
reply
555
views
Merge 1000 Genome gentotype AND genotype likelihood VCFs together
VCF
LiftoverVcf
Merge
updated 4 months ago by
Giulio Genovese
▴ 630 • written 4 months ago by
JourneyToAbyss
▴ 250
0
votes
0
replies
963
views
Comment:
Comment: Featurecounts: Unexpected number of features
5 months ago by
JourneyToAbyss
▴ 250
0
votes
1
reply
963
views
Comment:
Comment: Featurecounts: Unexpected number of features
5 months ago by
JourneyToAbyss
▴ 250
0
votes
0
replies
963
views
Comment:
Comment: Featurecounts: Unexpected number of features
5 months ago by
JourneyToAbyss
▴ 250
0
votes
1
reply
963
views
Comment:
Comment: Featurecounts: Unexpected number of features
5 months ago by
JourneyToAbyss
▴ 250
1
vote
8
replies
963
views
Featurecounts: Unexpected number of features
featurecounts
5 months ago by
JourneyToAbyss
▴ 250
2
votes
1
reply
2.2k
views
Comment:
Comment: LD Pruning in GWAS
13 months ago by
JourneyToAbyss
▴ 250
0
votes
1
reply
1.5k
views
Comment:
Comment: 1000 Genome: Cause of duplicate variants with different genotypes
20 months ago by
JourneyToAbyss
▴ 250
0
votes
7
replies
1.5k
views
1000 Genome: Cause of duplicate variants with different genotypes
CrossMap
1000Genome
1000G
updated 20 months ago by
Giulio Genovese
▴ 630 • written 20 months ago by
JourneyToAbyss
▴ 250
0
votes
1
reply
1.6k
views
Comment:
Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
20 months ago by
JourneyToAbyss
▴ 250
0
votes
1
reply
1.6k
views
Comment:
Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
20 months ago by
JourneyToAbyss
▴ 250
0
votes
6
replies
1.6k
views
Normal number of variants to lose during liftover: GRCh38 to hg19
liftover
1000genome
CrossMap
updated 20 months ago by
Giulio Genovese
▴ 630 • written 20 months ago by
JourneyToAbyss
▴ 250
3
votes
2
replies
3.0k
views
Extracting Residuals from Differential Expression Model
statistics
residuals
limma
updated 2.1 years ago by
Gordon Smyth
★ 8.3k • written 6.2 years ago by
JourneyToAbyss
▴ 250
4
votes
4
replies
2.1k
views
Understanding Used Assembly: Why aren't authors specific about patch version?
1000genomes
GRCh38
gnomad
assembly
freeze
updated 2.2 years ago by
GenoMax
154k • written 2.4 years ago by
JourneyToAbyss
▴ 250
0
votes
3
replies
1.8k
views
Help finding GTEx v8 Imputed Genotypes
SHAPEIT
GTEx
updated 5 months ago by
蒲蒲
• 0 • written 3.2 years ago by
JourneyToAbyss
▴ 250
0
votes
1
reply
972
views
Affymetrix Probes and Multiple Alignments
Affymetrix
HG-U133A 2.0
Microarray
updated 5.2 years ago by
Kevin Blighe
89k • written 5.2 years ago by
JourneyToAbyss
▴ 250
0
votes
0
replies
1.4k
views
MatrixEQTL: Inconsistent Results to lm()
MatrixEQTL
lm
missing
5.7 years ago by
JourneyToAbyss
▴ 250
3
votes
1
reply
1.9k
views
Duplicate and Different Annotations using biomaRt
biomaRt
biobase
ensembl
annotations
updated 6.0 years ago by
Kevin Blighe
89k • written 6.0 years ago by
JourneyToAbyss
▴ 250
0
votes
0
replies
1.1k
views
MatrixEQTL: Pre-processing steps
matrixEQTL
6.2 years ago by
JourneyToAbyss
▴ 250
3
votes
1
reply
1.6k
views
GTOOL and Plink: Single Dosage Probabilities
plink
gtool
6.3 years ago by
JourneyToAbyss
▴ 250
0
votes
0
replies
2.0k
views
Comment:
C: How are plink's hardcalls calculated?
6.3 years ago by
JourneyToAbyss
▴ 250
0
votes
1
reply
2.0k
views
Comment:
A: How are plink's hardcalls calculated?
6.3 years ago by
JourneyToAbyss
▴ 250
8
votes
4
replies
2.0k
views
How are plink's hardcalls calculated?
plink
6.3 years ago by
JourneyToAbyss
▴ 250
4
votes
1
reply
2.5k
views
Unable to query specific ensembl ID through biomaRt (R) or mygene (Python)
ensembl
mygene
biomart
gene symbols
ensembl ID
6.6 years ago by
JourneyToAbyss
▴ 250
3
votes
2
replies
2.5k
views
Difficulty Converting lncRNA gene symbol to Ensembl
gene symbol
ensembl
agilent
microarray
updated 6.7 years ago by
GouthamAtla
12k • written 6.7 years ago by
JourneyToAbyss
▴ 250
1
vote
1
reply
1.3k
views
Differential Expression of lncRNAs in Brain --- Can a database aid my search?
lncRNA
differential expression
database
updated 6.7 years ago by
piyushjo
▴ 710 • written 6.7 years ago by
JourneyToAbyss
▴ 250
41
votes
6
replies
39k
views
Plink: Understanding LD Clumping vs Pruning
Plink
eQTL
LD
Clumping
Pruning
updated 7.0 years ago by
Kevin Blighe
89k • written 7.0 years ago by
JourneyToAbyss
▴ 250
2
votes
1
reply
1.6k
views
Plink: Proper file format for linkage disequilibirum
plink
updated 7.0 years ago by
Ram
45k • written 7.0 years ago by
JourneyToAbyss
▴ 250
1
vote
1
reply
1.2k
views
Updating INDEL SNP positions
SNP
updated 7.2 years ago by
finswimmer
16k • written 7.2 years ago by
JourneyToAbyss
▴ 250
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