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Comment: C: What is the current standard for HLA allele typing prediction from SNP data?
5.2 years ago by curious ▴ 900
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Comment: C: Post-imputation QC GWAS analysis
5.2 years ago by curious ▴ 900
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Answer: A: Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/golde
5.2 years ago by curious ▴ 900
2
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5
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Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/ come from?
repeats golden path
5.2 years ago by curious ▴ 900
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Comment: C: Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/golde
5.2 years ago by curious ▴ 900
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2.2k
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Comment: C: Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/golde
5.2 years ago by curious ▴ 900
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1
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1.1k
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Comment: C: Refrence datasets for imputation
5.2 years ago by curious ▴ 900
2
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4.4k
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Answer: C: Post-imputation QC GWAS analysis
5.2 years ago by curious ▴ 900
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0
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709
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How many samples are too few for Hardy Weinberg equilibrium test?
gwas
5.2 years ago by curious ▴ 900
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1
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1.6k
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Comment: C: Can variant callers distinguish between a snp and the end of an indel?
5.2 years ago by curious ▴ 900
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1
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1.6k
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Comment: C: Can variant callers distinguish between a snp and the end of an indel?
5.2 years ago by curious ▴ 900
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1.6k
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Comment: C: Can variant callers distinguish between a snp and the end of an indel?
5.2 years ago by curious ▴ 900
3
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6
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1.6k
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Can variant callers distinguish between a snp and the end of an indel?
1000 genomes vcf variant calling
updated 5.2 years ago by 45k • written 5.2 years ago by ▴ 900
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3.8k
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Comment: C: Differentially expressed genes machine learning classifer
5.2 years ago by curious ▴ 900
1
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1
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3.8k
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Comment: C: Differentially expressed genes machine learning classifer
5.2 years ago by curious ▴ 900
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4.9k
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Answer: A: IDAT to VCF conversion
5.2 years ago by curious ▴ 900
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0
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1.6k
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Comment: C: Is GWAS genotype QC to exclude samples with inbreeding coefficient typically app
5.2 years ago by curious ▴ 900
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0
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1.5k
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Comment: C: Selection of SNPs after imputation
5.2 years ago by curious ▴ 900
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1.3k
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Comment: C: online link for SNP genotype frequency calculations
5.2 years ago by curious ▴ 900
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0
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1.1k
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Lifting over results in coordinates that do not agree with what the rsid suggests the coordinates should be?
liftover hla
5.3 years ago by curious ▴ 900
1
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5
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3.3k
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filter VCF based on info field that has a key but no value
bcftools vcf
updated 5.3 years ago by • 0 • written 5.7 years ago by ▴ 900
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0
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1.6k
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How does imputation software calculate haploid alternate allele dosage from posterior probabilities for genotypes?
impuation
5.3 years ago by curious ▴ 900
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0
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1.4k
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Comment: C: Simulating whole gene deletions for tuning a WES based CNV calling approach?
5.3 years ago by curious ▴ 900
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2
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1.4k
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Simulating whole gene deletions for tuning a WES based CNV calling approach?
WES
5.3 years ago by curious ▴ 900
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0
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1.2k
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Comment: C: Best practice for finding all genes SNPs, etc. related to a disease or phenotype
5.3 years ago by curious ▴ 900
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0
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4.9k
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Comment: C: Info Score > 1 Plink?
5.3 years ago by curious ▴ 900
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0
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1.3k
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Lifting over and harmonizing a plink file so major allele is forward on hg19?
plink strand liftover
5.3 years ago by curious ▴ 900
1
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1
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2.6k
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Comment: C: Imputation output from TOPMED server
5.3 years ago by curious ▴ 900
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0
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822
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Using only non-reference homozygous sites to evaluate SNP array concordance?
snp array
5.4 years ago by curious ▴ 900
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0
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1.2k
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Comment: C: Setting major allele in plink to plus strand of reference?
5.4 years ago by curious ▴ 900
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2
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1.2k
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Setting major allele in plink to plus strand of reference?
plink
5.4 years ago by curious ▴ 900
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5.5k
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Comment: C: Possible to add `chr` prefix to each chromosome in PLINK?
5.4 years ago by curious ▴ 900
3
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2
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5.5k
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Possible to add `chr` prefix to each chromosome in PLINK?
plink
updated 5.4 years ago by 11k • written 5.4 years ago by ▴ 900
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2.4k
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Comment: C: How to add a flag to the INFO column of a vcf with pysam?
5.4 years ago by curious ▴ 900
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1
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2.4k
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How to add a flag to the INFO column of a vcf with pysam?
bcf vcf pysam
5.4 years ago by curious ▴ 900
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0
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1.9k
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Comment: C: Extracting strings from the fasta header
5.4 years ago by curious ▴ 900
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0
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3.6k
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Comment: C: Is there any way to make samtools tabix go faster?
5.4 years ago by curious ▴ 900
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2
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3.6k
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Is there any way to make samtools tabix go faster?
tabix vcf bcf samtools
5.4 years ago by curious ▴ 900
0
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1
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7.8k
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Comment: C: speed up bcftools annotate command
5.4 years ago by curious ▴ 900
0
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1
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7.8k
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Comment: C: speed up bcftools annotate command
5.4 years ago by curious ▴ 900
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0
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3.0k
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Comment: C: Fastest was to sort a 340 gb BCF by chromosome and position?
5.4 years ago by curious ▴ 900
3
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9
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3.0k
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Fastest was to sort a 340 gb BCF by chromosome and position?
bcf bcftools
5.4 years ago by curious ▴ 900
1
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0
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8.4k
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Comment: C: bcftools view -r seems to be getting sites outside of the region I designate?
5.4 years ago by curious ▴ 900
3
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2
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8.4k
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bcftools view -r seems to be getting sites outside of the region I designate?
bcftools vcf bcf
updated 5.4 years ago by 45k • written 5.4 years ago by ▴ 900
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3.0k
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Comment: C: Fastest was to sort a 340 gb BCF by chromosome and position?
5.4 years ago by curious ▴ 900
0
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1
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3.0k
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Comment: C: Fastest was to sort a 340 gb BCF by chromosome and position?
5.4 years ago by curious ▴ 900
0
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1
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3.0k
views
Comment: C: Fastest was to sort a 340 gb BCF by chromosome and position?
5.4 years ago by curious ▴ 900
1
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0
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3.0k
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Comment: C: Fastest was to sort a BCF by chromosome and position?
5.4 years ago by curious ▴ 900
0
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0
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1.4k
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Comment: C: Can someone provide an example of the typical output of Illumina's Global Divers
5.4 years ago by curious ▴ 900
0
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1
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1.3k
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Comment: C: Fastest way to switch out sites on one BCF for sites in another BCF?
5.4 years ago by curious ▴ 900
316 results • Page 4 of 7
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