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0
votes
0
replies
2.8k
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Comment:
C: What is the current standard for HLA allele typing prediction from SNP data?
5.2 years ago by
curious
▴ 900
1
vote
0
replies
4.4k
views
Comment:
C: Post-imputation QC GWAS analysis
5.2 years ago by
curious
▴ 900
0
votes
0
replies
2.2k
views
Answer:
A: Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/golde
5.2 years ago by
curious
▴ 900
2
votes
5
replies
2.2k
views
Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/ come from?
repeats
golden path
5.2 years ago by
curious
▴ 900
0
votes
0
replies
2.2k
views
Comment:
C: Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/golde
5.2 years ago by
curious
▴ 900
0
votes
0
replies
2.2k
views
Comment:
C: Where does the 'simpleRepeat.txt' file from http://hgdownload.cse.ucsc.edu/golde
5.2 years ago by
curious
▴ 900
0
votes
1
reply
1.1k
views
Comment:
C: Refrence datasets for imputation
5.2 years ago by
curious
▴ 900
2
votes
0
replies
4.4k
views
Answer:
C: Post-imputation QC GWAS analysis
5.2 years ago by
curious
▴ 900
0
votes
0
replies
709
views
How many samples are too few for Hardy Weinberg equilibrium test?
gwas
5.2 years ago by
curious
▴ 900
0
votes
1
reply
1.6k
views
Comment:
C: Can variant callers distinguish between a snp and the end of an indel?
5.2 years ago by
curious
▴ 900
0
votes
1
reply
1.6k
views
Comment:
C: Can variant callers distinguish between a snp and the end of an indel?
5.2 years ago by
curious
▴ 900
0
votes
0
replies
1.6k
views
Comment:
C: Can variant callers distinguish between a snp and the end of an indel?
5.2 years ago by
curious
▴ 900
3
votes
6
replies
1.6k
views
Can variant callers distinguish between a snp and the end of an indel?
1000 genomes
vcf
variant calling
updated 5.2 years ago by
Ram
45k • written 5.2 years ago by
curious
▴ 900
0
votes
0
replies
3.8k
views
Comment:
C: Differentially expressed genes machine learning classifer
5.2 years ago by
curious
▴ 900
1
vote
1
reply
3.8k
views
Comment:
C: Differentially expressed genes machine learning classifer
5.2 years ago by
curious
▴ 900
0
votes
0
replies
4.9k
views
Answer:
A: IDAT to VCF conversion
5.2 years ago by
curious
▴ 900
0
votes
0
replies
1.6k
views
Comment:
C: Is GWAS genotype QC to exclude samples with inbreeding coefficient typically app
5.2 years ago by
curious
▴ 900
0
votes
0
replies
1.5k
views
Comment:
C: Selection of SNPs after imputation
5.2 years ago by
curious
▴ 900
0
votes
0
replies
1.3k
views
Comment:
C: online link for SNP genotype frequency calculations
5.2 years ago by
curious
▴ 900
0
votes
0
replies
1.1k
views
Lifting over results in coordinates that do not agree with what the rsid suggests the coordinates should be?
liftover
hla
5.3 years ago by
curious
▴ 900
1
vote
5
replies
3.3k
views
filter VCF based on info field that has a key but no value
bcftools
vcf
updated 5.3 years ago by
caro1002
• 0 • written 5.7 years ago by
curious
▴ 900
0
votes
0
replies
1.6k
views
How does imputation software calculate haploid alternate allele dosage from posterior probabilities for genotypes?
impuation
5.3 years ago by
curious
▴ 900
0
votes
0
replies
1.4k
views
Comment:
C: Simulating whole gene deletions for tuning a WES based CNV calling approach?
5.3 years ago by
curious
▴ 900
0
votes
2
replies
1.4k
views
Simulating whole gene deletions for tuning a WES based CNV calling approach?
WES
5.3 years ago by
curious
▴ 900
0
votes
0
replies
1.2k
views
Comment:
C: Best practice for finding all genes SNPs, etc. related to a disease or phenotype
5.3 years ago by
curious
▴ 900
0
votes
0
replies
4.9k
views
Comment:
C: Info Score > 1 Plink?
5.3 years ago by
curious
▴ 900
0
votes
0
replies
1.3k
views
Lifting over and harmonizing a plink file so major allele is forward on hg19?
plink
strand
liftover
5.3 years ago by
curious
▴ 900
1
vote
1
reply
2.6k
views
Comment:
C: Imputation output from TOPMED server
5.3 years ago by
curious
▴ 900
0
votes
0
replies
822
views
Using only non-reference homozygous sites to evaluate SNP array concordance?
snp array
5.4 years ago by
curious
▴ 900
0
votes
0
replies
1.2k
views
Comment:
C: Setting major allele in plink to plus strand of reference?
5.4 years ago by
curious
▴ 900
0
votes
2
replies
1.2k
views
Setting major allele in plink to plus strand of reference?
plink
5.4 years ago by
curious
▴ 900
0
votes
0
replies
5.5k
views
Comment:
C: Possible to add `chr` prefix to each chromosome in PLINK?
5.4 years ago by
curious
▴ 900
3
votes
2
replies
5.5k
views
Possible to add `chr` prefix to each chromosome in PLINK?
plink
updated 5.4 years ago by
chrchang523
11k • written 5.4 years ago by
curious
▴ 900
0
votes
0
replies
2.4k
views
Comment:
C: How to add a flag to the INFO column of a vcf with pysam?
5.4 years ago by
curious
▴ 900
0
votes
1
reply
2.4k
views
How to add a flag to the INFO column of a vcf with pysam?
bcf
vcf
pysam
5.4 years ago by
curious
▴ 900
0
votes
0
replies
1.9k
views
Comment:
C: Extracting strings from the fasta header
5.4 years ago by
curious
▴ 900
0
votes
0
replies
3.6k
views
Comment:
C: Is there any way to make samtools tabix go faster?
5.4 years ago by
curious
▴ 900
0
votes
2
replies
3.6k
views
Is there any way to make samtools tabix go faster?
tabix
vcf
bcf
samtools
5.4 years ago by
curious
▴ 900
0
votes
1
reply
7.8k
views
Comment:
C: speed up bcftools annotate command
5.4 years ago by
curious
▴ 900
0
votes
1
reply
7.8k
views
Comment:
C: speed up bcftools annotate command
5.4 years ago by
curious
▴ 900
0
votes
0
replies
3.0k
views
Comment:
C: Fastest was to sort a 340 gb BCF by chromosome and position?
5.4 years ago by
curious
▴ 900
3
votes
9
replies
3.0k
views
Fastest was to sort a 340 gb BCF by chromosome and position?
bcf
bcftools
5.4 years ago by
curious
▴ 900
1
vote
0
replies
8.4k
views
Comment:
C: bcftools view -r seems to be getting sites outside of the region I designate?
5.4 years ago by
curious
▴ 900
3
votes
2
replies
8.4k
views
bcftools view -r seems to be getting sites outside of the region I designate?
bcftools
vcf
bcf
updated 5.4 years ago by
Ram
45k • written 5.4 years ago by
curious
▴ 900
0
votes
0
replies
3.0k
views
Comment:
C: Fastest was to sort a 340 gb BCF by chromosome and position?
5.4 years ago by
curious
▴ 900
0
votes
1
reply
3.0k
views
Comment:
C: Fastest was to sort a 340 gb BCF by chromosome and position?
5.4 years ago by
curious
▴ 900
0
votes
1
reply
3.0k
views
Comment:
C: Fastest was to sort a 340 gb BCF by chromosome and position?
5.4 years ago by
curious
▴ 900
1
vote
0
replies
3.0k
views
Comment:
C: Fastest was to sort a BCF by chromosome and position?
5.4 years ago by
curious
▴ 900
0
votes
0
replies
1.4k
views
Comment:
C: Can someone provide an example of the typical output of Illumina's Global Divers
5.4 years ago by
curious
▴ 900
0
votes
1
reply
1.3k
views
Comment:
C: Fastest way to switch out sites on one BCF for sites in another BCF?
5.4 years ago by
curious
▴ 900
316 results • Page
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