Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
744
views
How to count mutations to check for transcription strand bias?
strand transcription bias mutations counting
3.3 years ago by n,n ▴ 390
0
votes
1
reply
1.2k
views
Answer: Answer: The best single metric for a correlation matrix
4.0 years ago by n,n ▴ 390
0
votes
0
replies
951
views
Why can I not reproduce some of TCGA's MAF file contexts from the coding sequences of the mutated genes?
context MAF TCGA CDS
4.0 years ago by n,n ▴ 390
11
votes
10
replies
9.8k
views
What exactly should and shouldn't go in Combat's model matrix?
batch effects expression gene combat
updated 4.4 years ago by ★ 3.1k • written 4.4 years ago by ▴ 390
1
vote
1
reply
9.8k
views
Answer: Answer: What exactly should and shouldn't go in Combat's model matrix?
4.4 years ago by n,n ▴ 390
0
votes
0
replies
9.8k
views
Comment: Comment: What exactly should and shouldn't go in Combat's model matrix?
4.4 years ago by n,n ▴ 390
0
votes
1
reply
9.8k
views
Comment: Comment: What exactly should and shouldn't go in Combat's model matrix?
4.4 years ago by n,n ▴ 390
1
vote
0
replies
847
views
Does the GAF gene ontologies file only contain terms that are leaf nodes?
gene GO ontology
4.5 years ago by n,n ▴ 390
0
votes
1
reply
2.7k
views
Comment: Comment: How to cite a pathway from wikipathways in text and in references in APA format
4.5 years ago by n,n ▴ 390
2
votes
2
replies
1.4k
views
Will quantile normalization affect the result of the Tau statistic?
RNA-Seq tissue-specificity tau
4.9 years ago by n,n ▴ 390
0
votes
0
replies
810
views
Documentation on the contents of the "pubtatordb" package in R?
R pubtator
5.0 years ago by n,n ▴ 390
5
votes
8
replies
5.2k
views
Filtering contigs by length during assembly?
Assembly
updated 5.2 years ago by 20 • written 7.2 years ago by ▴ 390
1
vote
7
replies
2.8k
views
Error using the getGEO() patcher
GEOQuery R Bioconductor
updated 5.5 years ago by 20 • written 5.6 years ago by ▴ 390
0
votes
1
reply
2.3k
views
Comment: C: Interpretation of "standardized expression matrix"?
5.5 years ago by n,n ▴ 390
0
votes
0
replies
2.3k
views
Comment: C: Interpretation of "standardized expression matrix"?
5.5 years ago by n,n ▴ 390
0
votes
2
replies
2.3k
views
Comment: C: Interpretation of "standardized expression matrix"?
5.5 years ago by n,n ▴ 390
2
votes
6
replies
2.3k
views
Interpretation of "standardized expression matrix"?
RNA-Seq normalization
updated 5.5 years ago by 89k • written 5.5 years ago by ▴ 390
11
votes
1
reply
7.7k
views
How to interpret "pseudo count" in gene expression data handling context?
RNA-Seq normalization
updated 5.5 years ago by 90k • written 5.5 years ago by ▴ 390
0
votes
1
reply
2.8k
views
Comment: C: Error using the getGEO() patcher
5.6 years ago by n,n ▴ 390
0
votes
1
reply
2.8k
views
Comment: C: Error using the getGEO() patcher
5.6 years ago by n,n ▴ 390
0
votes
1
reply
2.8k
views
Comment: C: Error using the getGEO() patcher
5.6 years ago by n,n ▴ 390
3
votes
3
replies
4.7k
views
What are some references of works that use a TPM expression threshold for filtering samples/genes?
RNA-Seq
updated 5.7 years ago by 20 • written 5.7 years ago by ▴ 390
3
votes
1
reply
2.1k
views
Answer: A: Correlation vs differential expression testing
5.7 years ago by n,n ▴ 390
0
votes
0
replies
1.6k
views
Extra adjustment variables during batch effect correction
rna-seq ComBat batch-effect
updated 19 months ago by 45k • written 5.8 years ago by ▴ 390
0
votes
1
reply
2.2k
views
Comment: C: statistics method to find the relation between multiple variables of 50 samples
5.8 years ago by n,n ▴ 390
1
vote
1
reply
1.8k
views
Comment: C: Can I use batch effect correction "by parts"?
5.9 years ago by n,n ▴ 390
0
votes
1
reply
1.8k
views
Comment: C: Can I use batch effect correction "by parts"?
5.9 years ago by n,n ▴ 390
0
votes
1
reply
1.8k
views
Comment: C: Can I use batch effect correction "by parts"?
5.9 years ago by n,n ▴ 390
3
votes
7
replies
1.8k
views
Can I use batch effect correction "by parts"?
ComBat RNA-Seq batch-effect
updated 19 months ago by 45k • written 5.9 years ago by ▴ 390
0
votes
0
replies
1.3k
views
Comment: C: Time Series Network Identification (TSNI) data scaling
5.9 years ago by n,n ▴ 390
0
votes
2
replies
1.3k
views
Time Series Network Identification (TSNI) data scaling
expression TSNI
updated 5.9 years ago by ▴ 140 • written 5.9 years ago by ▴ 390
0
votes
1
reply
3.4k
views
Comment: C: Should normalization of expression data be performed over the entire dataset or
6.0 years ago by n,n ▴ 390
4
votes
4
replies
3.4k
views
Should normalization of expression data be performed over the entire dataset or only over the used subset of data?
RNA-Seq quantile normalization co-expression
updated 6.0 years ago by ★ 8.5k • written 6.0 years ago by ▴ 390
0
votes
0
replies
5.9k
views
Comment: C: Transcript vs. Gene TPM counts?
6.0 years ago by n,n ▴ 390
11
votes
7
replies
5.9k
views
Transcript vs. Gene TPM counts?
RNA-Seq GTEx GTEX
updated 6.1 years ago by ★ 4.2k • written 6.1 years ago by ▴ 390
0
votes
2
replies
5.9k
views
Comment: C: Transcript vs. Gene TPM counts?
6.1 years ago by n,n ▴ 390
0
votes
0
replies
925
views
How to efficiently fetch methylation beta values across multiple genes for multiple samples?
mehtylation database
6.3 years ago by n,n ▴ 390
1
vote
1
reply
1.4k
views
Download tissue distribution data from COSMIC?
database cosmic
updated 6.5 years ago by 20 • written 6.6 years ago by ▴ 390
0
votes
0
replies
1.3k
views
Comment: C: basic command in bash
7.0 years ago by n,n ▴ 390
0
votes
0
replies
2.8k
views
Answer: A: blastp download option with csv
7.0 years ago by n,n ▴ 390
0
votes
1
reply
2.7k
views
Comment: C: Extract sequences from the raw reads
7.0 years ago by n,n ▴ 390
3
votes
0
replies
2.2k
views
Answer: A: counting number of genes located on positive or negative strands
7.0 years ago by n,n ▴ 390
1
vote
1
reply
1.7k
views
Answer: A: need code for sorting fasta header
7.1 years ago by n,n ▴ 390
2
votes
1
reply
2.5k
views
Answer: A: How to separate mixed orientation raw illumina sequence into forward and reverse
7.1 years ago by n,n ▴ 390
0
votes
0
replies
2.6k
views
Comment: C: Faster way to get sequences from large fasta files?
7.1 years ago by n,n ▴ 390
1
vote
1
reply
2.6k
views
Answer: A: Faster way to get sequences from large fasta files?
7.1 years ago by n,n ▴ 390
0
votes
0
replies
1.5k
views
Comment: C: gene expression for cancer identification
7.1 years ago by n,n ▴ 390
3
votes
0
replies
3.4k
views
Answer: A: manipulating a file by R or bash?
7.1 years ago by n,n ▴ 390
1
vote
2
replies
6.3k
views
Answer: A: Join/Combine gff3 or gtf files
7.1 years ago by n,n ▴ 390
1
vote
1
reply
2.0k
views
Answer: A: How to write a proper bed file to extract sequence?
7.1 years ago by n,n ▴ 390
61 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6