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828
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Advice regarding small RNA annotation to a newly sequenced genome
annotation
smallRNA
RNA-Seq
R
plyranges
3.4 years ago by
Konstantinos Yeles
▴ 110
1
vote
6
replies
1000
views
Parallelization in R 2020
R
parallel
BiocParallel
doParallel
snowfall
updated 3.9 years ago by
zx8754
11k • written 3.9 years ago by
Konstantinos Yeles
▴ 110
6
votes
5
replies
1.1k
views
RIP-seq identifing reverse complement reads between smallRNA and targeted mRNA
RIP-seq
GenomicRanges
R
smallRNA
updated 5.0 years ago by
shawn.w.foley
★ 1.3k • written 5.0 years ago by
Konstantinos Yeles
▴ 110
1
vote
4
replies
1.2k
views
How to convert output from bowtie1 to Genomic ranges
RNA-Seq
GenomicRanges
bowtie
updated 5.2 years ago by
ATpoint
82k • written 5.2 years ago by
Konstantinos Yeles
▴ 110
7
votes
8
replies
2.1k
views
Normalization for small non-coding RNA (piRNAs)
normalization
DEseq2
edgeR
limma
updated 5.4 years ago by
A. Domingues
★ 2.7k • written 5.4 years ago by
Konstantinos Yeles
▴ 110
16
votes
9
replies
3.6k
views
smallRNA sequencing workflow and Database usage
sRNA-Seq
piRNA
annotation
normalization
DEseq2
updated 5.5 years ago by
ti&te
▴ 40 • written 5.5 years ago by
Konstantinos Yeles
▴ 110
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