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4
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4
replies
4.3k
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Official specs and API's for proteomics data (like Adam, VCF, HTS-JDK) (both file and distributed storage)
genomics proteomics api specification
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 5.4k
0
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1
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4.3k
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Comment: C: Official specs and API's for proteomics data (like Adam, VCF, HTS-JDK) (both fil
10.7 years ago by William ★ 5.4k
6
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3
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12k
views
Gatk Multi-Sample Vcf Variantfiltration
gatk vcf
updated 10.7 years ago by 20 • written 12.3 years ago by ★ 5.4k
0
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1
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1.7k
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Answer: Answer: Alleles tested by probes 23me chip
updated 3.5 years ago by 45k • written 10.8 years ago by ★ 5.4k
203
votes
41
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29k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics cram gatk galaxy
updated 2.6 years ago by 45k • written 10.8 years ago by ★ 5.4k
1
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1
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29k
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Comment: Comment: Genomics is not Special. Computational Biologists are reinventing the wheel for
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 5.4k
0
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0
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21k
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Comment: Comment: Why is Hadoop not used a lot in bio-informatics?
updated 3.7 years ago by 45k • written 10.9 years ago by ★ 5.4k
0
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0
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Comment: Comment: Do freeBayes and platypus support gVCF (ie incremental variant calling for large
updated 3.7 years ago by 45k • written 10.9 years ago by ★ 5.4k
0
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0
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5.6k
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Comment: C: Open Source Variant Caller comparable to GATK Haplotype Caller?
11.0 years ago by William ★ 5.4k
3
votes
2
replies
2.9k
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Looking for a bam file with aligned (error corrected) PacBio reads
bam pacbio
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 5.4k
4
votes
2
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8.0k
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How To Convert A Multisample Vcf To A Format That Can Be Loaded In Haploview?
vcf haploview haplotype ped
updated 3.7 years ago by 45k • written 11.9 years ago by ★ 5.4k
0
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0
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5.2k
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Comment: Comment: Principal component analysis for proteomics data ( like SNPRelate )
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 5.4k
4
votes
2
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5.2k
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Principal component analysis for proteomics data ( like SNPRelate )
pca proteomics
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 5.4k
0
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1
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5.9k
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Answer: Answer: GATK: How to filter variant sites of sample VCF that are not present in a set of
updated 3.9 years ago by 45k • written 11.1 years ago by ★ 5.4k
5
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0
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Forum: Small tools MANIFESTO for Bioinformatics
software-development
updated 2.5 years ago by 45k • written 11.1 years ago by ★ 5.4k
3
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0
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2.9k
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Answer: Answer: Looking for a PhD research topic
updated 3.7 years ago by 45k • written 11.1 years ago by ★ 5.4k
2
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0
replies
3.3k
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Answer: Answer: How can I confirm structural variation is correct?
updated 3.7 years ago by 45k • written 11.1 years ago by ★ 5.4k
0
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1
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11k
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Comment: Comment: Bio-informatics salary distribution versus Java salary distribution in the UK
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 5.4k
51
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24
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11k
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7 follow
Forum: Bio-informatics salary distribution versus Java salary distribution in the UK
career
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 5.4k
0
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0
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11k
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Comment: C: Bio-informatics salary distribution versus Java salary distribution in the UK
11.1 years ago by William ★ 5.4k
1
vote
0
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8.4k
views
Answer: Answer: Comparing VCF Files
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 5.4k
3
votes
0
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2.6k
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Forum: A History of Bioinformatics (told from the Year 2039) by C. Titus Brown at BOSC 2014
career future
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 5.4k
4
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0
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1.8k
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News: $650M gift to Broad seeks to propel (Genomics based ) psychiatric research
sequencing
updated 2.5 years ago by 45k • written 11.2 years ago by ★ 5.4k
5
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1
reply
2.7k
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Forum: Is US biomedical research heading for a breakdown? Bruce Alberts thinks so in PNAS Article.
career phd
updated 2.5 years ago by 45k • written 11.4 years ago by ★ 5.4k
0
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1
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3.3k
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Answer: A: Concordance Between Illumina 50 Snp Chip And Illumina Paired-End Ngs Snps
11.5 years ago by William ★ 5.4k
5
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1
reply
3.9k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 2.5 years ago by 45k • written 11.5 years ago by ★ 5.4k
0
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0
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3.6k
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Comment: C: Keats: A Scala (And Scalable) Port Of The Picard Genomics Library Of The Broad
11.5 years ago by William ★ 5.4k
8
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3
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3.6k
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Tool: Keats: A Scala (And Scalable) Port Of The Picard Genomics Library Of The Broad Institute.
picard
updated 2.2 years ago by 45k • written 11.5 years ago by ★ 5.4k
2
votes
5
replies
4.7k
views
Which Snp Caller / Method To Use After Aligning Rna-Seq With Tophat
snp tophat2 rna-seq
updated 11.6 years ago by ▴ 440 • written 12.4 years ago by ★ 5.4k
8
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1
reply
13k
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Answer: A: Are There Internships In Bioinformatics? How Can A Foreign Student Get Started I
11.6 years ago by William ★ 5.4k
11
votes
9
replies
7.7k
views
6 follow
Standard Post Variant Call (Vcf) Analysis That Work Out Of The Box
vcf analysis
updated 11.8 years ago by ▴ 130 • written 11.9 years ago by ★ 5.4k
0
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2
replies
7.7k
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Comment: C: Standard Post Variant Call (Vcf) Analysis That Work Out Of The Box
11.9 years ago by William ★ 5.4k
0
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0
replies
5.0k
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Comment: C: Best Way To View Haplotypes In Non-Human Organisms?
11.9 years ago by William ★ 5.4k
0
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0
replies
4.0k
views
Answer: A: Are We At A Point Yet Where We Can Do Bioinformatics Research Based On Public Da
11.9 years ago by William ★ 5.4k
0
votes
1
reply
3.0k
views
Split Contig Structural Variant Calling On Bac Contigs Aligned With Bwa-Mem.
sv pindel
updated 11.9 years ago by 20 • written 12.1 years ago by ★ 5.4k
0
votes
2
replies
9.9k
views
Answer: A: Convert Solid Xsq To Fastq Without Intermediates Files
11.9 years ago by William ★ 5.4k
10
votes
1
reply
7.4k
views
Vcftools Vcf-Stats Field Definitions
vcf statistics vcftools
updated 11.9 years ago by ▴ 90 • written 11.9 years ago by ★ 5.4k
0
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0
replies
39k
views
Comment: C: Multi-Sample Vcf To Phylogenetic Tree.
11.9 years ago by William ★ 5.4k
1
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0
replies
8.3k
views
Answer: A: Reliable Tools To Filter Vcf Format Files
12.0 years ago by William ★ 5.4k
0
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1
reply
8.0k
views
Comment: C: Sambamba: High Performance Alternative For Samtools And Picard For Indexing, Sor
12.0 years ago by William ★ 5.4k
0
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0
replies
8.0k
views
Comment: C: Sambamba: High Performance Alternative For Samtools And Picard For Indexing, Sor
12.0 years ago by William ★ 5.4k
15
votes
6
replies
8.0k
views
Tool: Sambamba: High Performance Alternative For Samtools And Picard For Indexing, Sorting And Merging Bam Files
sambamba bam samtools
updated 2.2 years ago by 45k • written 12.0 years ago by ★ 5.4k
12
votes
5
replies
4.9k
views
Using Gatk On Inbred Species - What To Do With The Heterozygous Calls?
gatk
updated 12.0 years ago by 12k • written 12.2 years ago by ★ 5.4k
0
votes
1
reply
26k
views
Comment: C: Difference Between Somatic And Germline Variant Calling?
12.0 years ago by William ★ 5.4k
2
votes
3
replies
3.0k
views
Do People Use Grid Computing For Ngs Analysis Or Just Local Cluster Computing (Sge/Pbs)
ngs
updated 12.0 years ago by ▴ 660 • written 12.0 years ago by ★ 5.4k
1
vote
2
replies
8.3k
views
Answer: A: Filtering Gatk Indel Output Length 20+
12.0 years ago by William ★ 5.4k
0
votes
1
reply
26k
views
Comment: C: Difference Between Somatic And Germline Variant Calling?
12.0 years ago by William ★ 5.4k
0
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0
replies
3.7k
views
Comment: C: Cnvnator Deletion Calls All Based On Mapping Quality Zero Reads?
12.0 years ago by William ★ 5.4k
1
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3
replies
3.7k
views
Cnvnator Deletion Calls All Based On Mapping Quality Zero Reads?
cnv quality
12.0 years ago by William ★ 5.4k
0
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1
reply
5.2k
views
Answer: A: Breakdancer Bam2Cfg.Pl , Coefficient Of Variation Is Too Large, Not Excluding Ou
12.0 years ago by William ★ 5.4k
385 results • Page 5 of 8
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