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6
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4
replies
7.6k
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Trying to separate different chains of a PDB file into separate files. Biopython gives an error
python biopython
updated 5.0 years ago by ▴ 10 • written 6.4 years ago by ▴ 80
2
votes
2
replies
4.1k
views
Biopython module Bio.PDB.DSSP issue with solvent accessible surface area?
python biopython PDB DSSP
updated 6.1 years ago by ▴ 10 • written 6.7 years ago by ▴ 80
0
votes
0
replies
1.9k
views
Python SearchIO: Extracting information from QueryResults?
python blast xml
6.5 years ago by westin.kosater ▴ 80
1
vote
2
replies
2.8k
views
Want to loop through list of BLAST objects in python
biopython BLAST python
updated 6.5 years ago by 16k • written 6.5 years ago by ▴ 80
0
votes
0
replies
3.0k
views
Comment: C: CUFFLINKS error: Warning: invalid start coordinate at line:
6.6 years ago by westin.kosater ▴ 80
0
votes
1
reply
3.0k
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Answer: C: CUFFLINKS error: Warning: invalid start coordinate at line:
6.6 years ago by westin.kosater ▴ 80
0
votes
4
replies
3.0k
views
CUFFLINKS error: Warning: invalid start coordinate at line:
ChIP-Seq
6.6 years ago by westin.kosater ▴ 80
0
votes
1
reply
4.7k
views
Make a multiple sequence alignment with a HMMER hmmsearch output?
hmmer
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 80
1
vote
0
replies
1.8k
views
Trying to interpret the content of a hmm file from HMMER3
hmmer
6.7 years ago by westin.kosater ▴ 80
1
vote
1
reply
1.7k
views
Python: I have a list of probabilities, and I want to use them to generate mutations in a protein sequence
python PDB dssp
updated 6.7 years ago by ▴ 110 • written 6.7 years ago by ▴ 80
0
votes
2
replies
2.0k
views
List of sequences in a fasta file. I need to generate the reverse complement for each of them.
biopython python
updated 6.8 years ago by 13k • written 6.8 years ago by ▴ 80
0
votes
2
replies
2.5k
views
Getting an error whilst trying to import Biopython SeqIO
python biopython
6.8 years ago by westin.kosater ▴ 80
3
votes
1
reply
2.5k
views
Putting atomic coordinates from PDB file into Pandas dataframe?
pandas python PDB
updated 6.9 years ago by 45k • written 6.9 years ago by ▴ 80
0
votes
1
reply
4.8k
views
Comment: C: Creating a distance matrix from PDB file coordinates (Python)
6.9 years ago by westin.kosater ▴ 80
3
votes
5
replies
4.8k
views
Creating a distance matrix from PDB file coordinates (Python)
pdb python
updated 6.9 years ago by 22k • written 6.9 years ago by ▴ 80
1
vote
1
reply
19k
views
Comment: C: How do I download and install DSSP?
7.0 years ago by westin.kosater ▴ 80
6
votes
3
replies
19k
views
How do I download and install DSSP?
dssp python biopython
updated 7.0 years ago by 22k • written 7.0 years ago by ▴ 80
5
votes
6
replies
2.8k
views
Trying to use regular expressions to edit a PDB text file.What am I doing wrong?
python biopython regex
updated 7.0 years ago by 22k • written 7.0 years ago by ▴ 80
0
votes
0
replies
5.9k
views
Comment: C: How can I use biopython to extract each alpha carbon from a PDB file?
7.0 years ago by westin.kosater ▴ 80
2
votes
2
replies
5.9k
views
How can I use biopython to extract each alpha carbon from a PDB file?
python biopython pdb
7.0 years ago by westin.kosater ▴ 80
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