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DiffBind - Comparing normalization/background methods - how to create a heatmap (as in 7.5)?
DiffBind normalization ChIPseq
updated 7 weeks ago by ★ 1.5k • written 7 weeks ago by ▴ 10
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390
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Comment: Comment: help for dba.count settings for RNAPII-ChIP using GRanges peakset
4 months ago by bertb ▴ 10
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2
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390
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help for dba.count settings for RNAPII-ChIP using GRanges peakset
DiffBind ChIPseq
4 months ago by bertb ▴ 10
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353
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Comment: Comment: Problems with dba.analyze in DiffBind - are blacklists/greylists required to obt
4 months ago by bertb ▴ 10
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2
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353
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Problems with dba.analyze in DiffBind - are blacklists/greylists required to obtain DESeq sites?
blacklist dba.analyze ChIPseq greylist diffbind
4 months ago by bertb ▴ 10
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277
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Comment: Comment: DiffBind normalization returned NULL
4 months ago by bertb ▴ 10
2
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2
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277
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DiffBind normalization returned NULL
DiffBind dba.normalize normalization ChIPseq
4 months ago by bertb ▴ 10
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1
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552
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Comment: C: error when running NGS tools in bash script
18 months ago by bertb ▴ 10
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4
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552
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error when running NGS tools in bash script
software error automation scripting
18 months ago by bertb ▴ 10
3
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10
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1.4k
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how to identify where multi-mappers, or "non primary hits" are mapping to
RNA-Seq alignment next-gen
updated 19 months ago by 20 • written 20 months ago by ▴ 10
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0
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445
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bam_stat.py and featureCounts stats don't seem to make sense (to me)
RNA-Seq alignment
19 months ago by bertb ▴ 10
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1.6k
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Comment: C: How to filter out chromosome regions from a .bam file
19 months ago by bertb ▴ 10
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4
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1.6k
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How to filter out chromosome regions from a .bam file
RNA-Seq alignment
updated 19 months ago by 2.8k • written 19 months ago by ▴ 10
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0
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412
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How to unique mappers become concordant pairs aligned >1 times
RNA-Seq alignment
20 months ago by bertb ▴ 10
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0
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1.4k
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Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
20 months ago by bertb ▴ 10
0
votes
1
reply
1.4k
views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
20 months ago by bertb ▴ 10
0
votes
1
reply
1.4k
views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
20 months ago by bertb ▴ 10
0
votes
1
reply
1.4k
views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
20 months ago by bertb ▴ 10
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0
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834
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Comment: C: featureCount with high multimapping fragments
20 months ago by bertb ▴ 10
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0
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646
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Comment: C: Picard CreateSequenceDictionary - file doesn't look right?
20 months ago by bertb ▴ 10
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1
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646
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Comment: C: Picard CreateSequenceDictionary - file doesn't look right?
20 months ago by bertb ▴ 10
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6
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646
views
Picard CreateSequenceDictionary - file doesn't look right?
RNA-Seq sequencing
updated 20 months ago by 20 • written 20 months ago by ▴ 10
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1
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646
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Comment: C: Picard CreateSequenceDictionary - file doesn't look right?
20 months ago by bertb ▴ 10
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1
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834
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Comment: C: featureCount with high multimapping fragments
21 months ago by bertb ▴ 10
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4
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834
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featureCount with high multimapping fragments
RNA-Seq sequencing
updated 21 months ago by 12k • written 21 months ago by ▴ 10
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1
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805
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Comment: C: htseq_counts process "Killed" during SAM alignment record pairs processed
21 months ago by bertb ▴ 10
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3
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805
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htseq_counts process "Killed" during SAM alignment record pairs processed
RNA-Seq next-gen
21 months ago by bertb ▴ 10
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0
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546
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Comment: C: Errors with Picard CollectRnaSeqMetrics
21 months ago by bertb ▴ 10
3
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2
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546
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Errors with Picard CollectRnaSeqMetrics
RNA-Seq alignment software error
updated 21 months ago by 146k • written 21 months ago by ▴ 10
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0
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690
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Comment: C: check_strandedness error with how_are_we_stranded_here tool
21 months ago by bertb ▴ 10
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1
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690
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Comment: C: check_strandedness error with how_are_we_stranded_here tool
21 months ago by bertb ▴ 10
1
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4
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690
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check_strandedness error with how_are_we_stranded_here tool
RNA-Seq sequencing assembly
21 months ago by bertb ▴ 10
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1
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605
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Comment: C: how_are_we_stranded_here install issue on Xubuntu
21 months ago by bertb ▴ 10
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0
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605
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Comment: C: how_are_we_stranded_here install issue on Xubuntu
21 months ago by bertb ▴ 10
4
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5
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605
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how_are_we_stranded_here install issue on Xubuntu
RNA-Seq sequencing Assembly
updated 21 months ago by 36k • written 21 months ago by ▴ 10
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1
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2.5k
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Comment: C: MACS2 won't build model - too few paired peaks, but I'm not using paired data
3.6 years ago by bertb ▴ 10
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0
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2.5k
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Comment: C: MACS2 won't build model - too few paired peaks, but I'm not using paired data
3.6 years ago by bertb ▴ 10
0
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5
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2.5k
views
MACS2 won't build model - too few paired peaks, but I'm not using paired data
ChIP-Seq
3.6 years ago by bertb ▴ 10
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