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0
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0
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486
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Comment: Comment: How to compare peak profiles for a subset of ChIPseq genes
4 months ago by bertb ▴ 20
2
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2
replies
486
views
How to compare peak profiles for a subset of ChIPseq genes
DiffBind composite-peak-profile ChIP-seq
4 months ago by bertb ▴ 20
0
votes
1
reply
465
views
ChIPQC read depth doesn't match BAM files
ChIPseq ChIPQC
updated 16 months ago by ★ 2.0k • written 17 months ago by ▴ 20
1
vote
1
reply
993
views
DiffBind - Comparing normalization/background methods - how to create a heatmap (as in 7.5)?
DiffBind normalization ChIPseq
updated 19 months ago by ★ 2.0k • written 19 months ago by ▴ 20
0
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0
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738
views
Comment: Comment: help for dba.count settings for RNAPII-ChIP using GRanges peakset
21 months ago by bertb ▴ 20
1
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2
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738
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help for dba.count settings for RNAPII-ChIP using GRanges peakset
DiffBind ChIPseq
21 months ago by bertb ▴ 20
0
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0
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1.3k
views
Comment: Comment: Problems with dba.analyze in DiffBind - are blacklists/greylists required to obt
22 months ago by bertb ▴ 20
3
votes
2
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1.3k
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Problems with dba.analyze in DiffBind - are blacklists/greylists required to obtain DESeq sites?
blacklist dba.analyze ChIPseq greylist diffbind
22 months ago by bertb ▴ 20
0
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0
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842
views
Comment: Comment: DiffBind normalization returned NULL
22 months ago by bertb ▴ 20
3
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2
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842
views
DiffBind normalization returned NULL
DiffBind dba.normalize normalization ChIPseq
22 months ago by bertb ▴ 20
0
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1
reply
887
views
Comment: C: error when running NGS tools in bash script
3.0 years ago by bertb ▴ 20
0
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4
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887
views
error when running NGS tools in bash script
software error automation scripting
3.0 years ago by bertb ▴ 20
3
votes
10
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2.6k
views
how to identify where multi-mappers, or "non primary hits" are mapping to
RNA-Seq alignment next-gen
updated 3.0 years ago by 20 • written 3.1 years ago by ▴ 20
0
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0
replies
745
views
bam_stat.py and featureCounts stats don't seem to make sense (to me)
RNA-Seq alignment
3.1 years ago by bertb ▴ 20
0
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0
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3.4k
views
Comment: C: How to filter out chromosome regions from a .bam file
3.1 years ago by bertb ▴ 20
8
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4
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3.4k
views
How to filter out chromosome regions from a .bam file
RNA-Seq alignment
updated 3.1 years ago by 3.0k • written 3.1 years ago by ▴ 20
0
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0
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626
views
How to unique mappers become concordant pairs aligned >1 times
RNA-Seq alignment
3.1 years ago by bertb ▴ 20
0
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0
replies
2.6k
views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
3.1 years ago by bertb ▴ 20
0
votes
1
reply
2.6k
views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
3.1 years ago by bertb ▴ 20
0
votes
1
reply
2.6k
views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
3.1 years ago by bertb ▴ 20
0
votes
1
reply
2.6k
views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
3.1 years ago by bertb ▴ 20
0
votes
0
replies
1.6k
views
Comment: C: featureCount with high multimapping fragments
3.1 years ago by bertb ▴ 20
0
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0
replies
1.2k
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Comment: C: Picard CreateSequenceDictionary - file doesn't look right?
3.1 years ago by bertb ▴ 20
0
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1
reply
1.2k
views
Comment: C: Picard CreateSequenceDictionary - file doesn't look right?
3.1 years ago by bertb ▴ 20
1
vote
6
replies
1.2k
views
Picard CreateSequenceDictionary - file doesn't look right?
RNA-Seq sequencing
updated 3.2 years ago by 20 • written 3.2 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Comment: C: Picard CreateSequenceDictionary - file doesn't look right?
3.2 years ago by bertb ▴ 20
0
votes
1
reply
1.6k
views
Comment: C: featureCount with high multimapping fragments
3.2 years ago by bertb ▴ 20
0
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4
replies
1.6k
views
featureCount with high multimapping fragments
RNA-Seq sequencing
updated 3.2 years ago by 13k • written 3.2 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Comment: C: htseq_counts process "Killed" during SAM alignment record pairs processed
3.2 years ago by bertb ▴ 20
0
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3
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1.3k
views
htseq_counts process "Killed" during SAM alignment record pairs processed
RNA-Seq next-gen
3.2 years ago by bertb ▴ 20
0
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0
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860
views
Comment: C: Errors with Picard CollectRnaSeqMetrics
3.2 years ago by bertb ▴ 20
3
votes
2
replies
860
views
Errors with Picard CollectRnaSeqMetrics
RNA-Seq alignment software error
updated 3.2 years ago by 158k • written 3.2 years ago by ▴ 20
0
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0
replies
1.2k
views
Comment: C: check_strandedness error with how_are_we_stranded_here tool
3.2 years ago by bertb ▴ 20
0
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1
reply
1.2k
views
Comment: C: check_strandedness error with how_are_we_stranded_here tool
3.2 years ago by bertb ▴ 20
1
vote
4
replies
1.2k
views
check_strandedness error with how_are_we_stranded_here tool
RNA-Seq sequencing assembly
3.2 years ago by bertb ▴ 20
0
votes
1
reply
981
views
Comment: C: how_are_we_stranded_here install issue on Xubuntu
3.2 years ago by bertb ▴ 20
0
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0
replies
981
views
Comment: C: how_are_we_stranded_here install issue on Xubuntu
3.2 years ago by bertb ▴ 20
4
votes
5
replies
981
views
how_are_we_stranded_here install issue on Xubuntu
RNA-Seq sequencing Assembly
updated 3.2 years ago by 41k • written 3.2 years ago by ▴ 20
0
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1
reply
3.4k
views
Comment: C: MACS2 won't build model - too few paired peaks, but I'm not using paired data
5.0 years ago by bertb ▴ 20
0
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0
replies
3.4k
views
Comment: C: MACS2 won't build model - too few paired peaks, but I'm not using paired data
5.0 years ago by bertb ▴ 20
0
votes
5
replies
3.4k
views
MACS2 won't build model - too few paired peaks, but I'm not using paired data
ChIP-Seq
5.0 years ago by bertb ▴ 20
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