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1
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2
replies
1.0k
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Samtools pileup extract read length for position
SNP pileup samtools bam
updated 2.8 years ago by 14k • written 2.8 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Comment: C: change missing genotype in bcf file from 0/0 to ./. to run plink
3.1 years ago by rah ▴ 20
0
votes
3
replies
1.2k
views
change missing genotype in bcf file from 0/0 to ./. to run plink
bcftools plink SNP genotype bcf
3.1 years ago by rah ▴ 20
0
votes
0
replies
641
views
Comment: C: Human contamination in Chimpanzee or Bonobo data
3.2 years ago by rah ▴ 20
0
votes
2
replies
641
views
Human contamination in Chimpanzee or Bonobo data
next-gen sequencing contamination alignment
3.2 years ago by rah ▴ 20
1
vote
3
replies
1.1k
views
Combine multiple samtools view
samtools bam alignment
updated 3.3 years ago by 141k • written 3.3 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Comment: C: Combine multiple samtools view
3.3 years ago by rah ▴ 20
0
votes
0
replies
764
views
Htslib c++ library faidx fetch region
samtools cpp faidx htslib
updated 11 months ago by 43k • written 3.5 years ago by ▴ 20
0
votes
3
replies
3.4k
views
Gene Annotation in Bed file
Gene Annotation Disease
updated 4.6 years ago by ▴ 680 • written 4.6 years ago by ▴ 20
1
vote
1
reply
1.8k
views
Mapping quality in Oxford Nanopore
Minimap2 Mapping Quality Oxford Nanopore
updated 4.6 years ago by 20 • written 4.8 years ago by ▴ 20
0
votes
0
replies
2.3k
views
Comment: C: Low Mapping percentage with Minimap2 due to contamination
5.1 years ago by rah ▴ 20
0
votes
0
replies
2.3k
views
Comment: C: Low Mapping percentage with Minimap2 due to contamination
5.1 years ago by rah ▴ 20
1
vote
4
replies
2.3k
views
Low Mapping percentage with Minimap2 due to contamination
reference genome Minimap2 Mapping Nanopore
5.1 years ago by rah ▴ 20
0
votes
0
replies
1.7k
views
Comment: C: Extract several parts from fasta header
5.1 years ago by rah ▴ 20
0
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0
replies
1.7k
views
Comment: C: Extract several parts from fasta header
5.1 years ago by rah ▴ 20
0
votes
0
replies
1.7k
views
Comment: C: Extract several parts from fasta header
5.1 years ago by rah ▴ 20
1
vote
6
replies
1.7k
views
Extract several parts from fasta header
fasta grep sed unix bash
5.1 years ago by rah ▴ 20
0
votes
0
replies
1.5k
views
Comment: C: Bash: For loop with two statements, first statements as input to second with .fa
5.2 years ago by rah ▴ 20
0
votes
0
replies
1.5k
views
Comment: C: Bash: For loop with two statements, first statements as input to second with .fa
5.2 years ago by rah ▴ 20
0
votes
1
reply
1.1k
views
Bash: selecting directory and fasta files from assembly
Assembly fasta unix bash assembly
updated 13 months ago by 43k • written 5.2 years ago by ▴ 20
6
votes
5
replies
1.5k
views
Bash: For loop with two statements, first statements as input to second with .fasta files
fasta assembly bash sequence
updated 13 months ago by 43k • written 5.2 years ago by ▴ 20
0
votes
0
replies
907
views
Dotplots and weight matrices for quality assessment
Dotplot weight matrix PSSM PWM PSWM
updated 5.2 years ago by 20 • written 5.2 years ago by ▴ 20
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