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1
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2
replies
1.4k
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Samtools pileup extract read length for position
SNP pileup samtools bam
updated 4.3 years ago by 15k • written 4.3 years ago by ▴ 30
0
votes
1
reply
1.8k
views
Comment: C: change missing genotype in bcf file from 0/0 to ./. to run plink
4.6 years ago by rah ▴ 30
0
votes
3
replies
1.8k
views
change missing genotype in bcf file from 0/0 to ./. to run plink
bcftools plink SNP genotype bcf
4.6 years ago by rah ▴ 30
0
votes
0
replies
988
views
Comment: C: Human contamination in Chimpanzee or Bonobo data
4.7 years ago by rah ▴ 30
0
votes
2
replies
988
views
Human contamination in Chimpanzee or Bonobo data
next-gen sequencing contamination alignment
4.7 years ago by rah ▴ 30
1
vote
3
replies
1.6k
views
Combine multiple samtools view
samtools bam alignment
updated 4.8 years ago by 154k • written 4.8 years ago by ▴ 30
0
votes
0
replies
1.6k
views
Comment: C: Combine multiple samtools view
4.8 years ago by rah ▴ 30
1
vote
0
replies
1.1k
views
Htslib c++ library faidx fetch region
samtools cpp faidx htslib
updated 2.4 years ago by 45k • written 4.9 years ago by ▴ 30
0
votes
3
replies
4.9k
views
Gene Annotation in Bed file
Gene Annotation Disease
updated 6.1 years ago by ▴ 740 • written 6.1 years ago by ▴ 30
1
vote
1
reply
2.1k
views
Mapping quality in Oxford Nanopore
Minimap2 Mapping Quality Oxford Nanopore
updated 6.1 years ago by 20 • written 6.2 years ago by ▴ 30
0
votes
0
replies
3.2k
views
Comment: C: Low Mapping percentage with Minimap2 due to contamination
6.6 years ago by rah ▴ 30
0
votes
0
replies
3.2k
views
Comment: C: Low Mapping percentage with Minimap2 due to contamination
6.6 years ago by rah ▴ 30
1
vote
4
replies
3.2k
views
Low Mapping percentage with Minimap2 due to contamination
reference genome Minimap2 Mapping Nanopore
6.6 years ago by rah ▴ 30
0
votes
0
replies
2.4k
views
Comment: C: Extract several parts from fasta header
6.6 years ago by rah ▴ 30
0
votes
0
replies
2.4k
views
Comment: C: Extract several parts from fasta header
6.6 years ago by rah ▴ 30
0
votes
0
replies
2.4k
views
Comment: C: Extract several parts from fasta header
6.6 years ago by rah ▴ 30
1
vote
6
replies
2.4k
views
Extract several parts from fasta header
fasta grep sed unix bash
6.6 years ago by rah ▴ 30
0
votes
0
replies
2.1k
views
Comment: C: Bash: For loop with two statements, first statements as input to second with .fa
6.6 years ago by rah ▴ 30
0
votes
0
replies
2.1k
views
Comment: C: Bash: For loop with two statements, first statements as input to second with .fa
6.6 years ago by rah ▴ 30
0
votes
1
reply
1.3k
views
Bash: selecting directory and fasta files from assembly
Assembly fasta unix bash assembly
updated 2.6 years ago by 45k • written 6.6 years ago by ▴ 30
6
votes
5
replies
2.1k
views
Bash: For loop with two statements, first statements as input to second with .fasta files
fasta assembly bash sequence
updated 2.6 years ago by 45k • written 6.6 years ago by ▴ 30
0
votes
0
replies
1.1k
views
Dotplots and weight matrices for quality assessment
Dotplot weight matrix PSSM PWM PSWM
updated 6.7 years ago by 20 • written 6.7 years ago by ▴ 30
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