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Comment: Comment: Appending a Poly-A Tail to a Reference Transcriptome
13 months ago by jon.klonowski ▴ 210
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2.3k
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Comment: Comment: Filter out overlapping deletions from a VCF file.
13 months ago by jon.klonowski ▴ 210
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0
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2.3k
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Comment: Comment: Problems with overlapping variants in a vcf file
13 months ago by jon.klonowski ▴ 210
2
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1
reply
761
views
Removing / Excluding / Collapsing Overlapping Indels
bcftools genome vcf genotyping gatk
13 months ago by jon.klonowski ▴ 210
0
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0
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761
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Comment: Comment: Removing / Excluding / Collapsing Overlapping Indels
13 months ago by jon.klonowski ▴ 210
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0
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2.2k
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Comment: Comment: GATK SelectVariants consider spanning/overlapping deletions as SNP
13 months ago by jon.klonowski ▴ 210
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0
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2.2k
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Comment: Comment: GATK SelectVariants consider spanning/overlapping deletions as SNP
13 months ago by jon.klonowski ▴ 210
3
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2
replies
827
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Appending a Poly-A Tail to a Reference Transcriptome
bowtie RNAseq ASE transcriptome alignment
updated 13 months ago by 153k • written 13 months ago by ▴ 210
0
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0
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2.3k
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Comment: Comment: bcftools norm resulting in '*' in alternate allele
13 months ago by jon.klonowski ▴ 210
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0
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1.6k
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Comment: Comment: Why do I have * in my FASTA? g2gtools diploid
13 months ago by jon.klonowski ▴ 210
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0
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1.6k
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Comment: Comment: Why do I have * in my FASTA?
13 months ago by jon.klonowski ▴ 210
0
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0
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1.6k
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Comment: Comment: Why do I have * in my FASTA?
13 months ago by jon.klonowski ▴ 210
0
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0
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1.6k
views
Comment: Comment: Why do I have * in my FASTA?
13 months ago by jon.klonowski ▴ 210
0
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1
reply
1.6k
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Comment: Comment: Why do I have * in my FASTA?
13 months ago by jon.klonowski ▴ 210
0
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1
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1.6k
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Comment: Comment: Why do I have * in my FASTA?
13 months ago by jon.klonowski ▴ 210
0
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0
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1.6k
views
Comment: Comment: Why do I have * in my FASTA?
13 months ago by jon.klonowski ▴ 210
0
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11
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1.6k
views
Why do I have * in my FASTA? g2gtools diploid
g2gtools RNAseq FASTA genome transcriptome
13 months ago by jon.klonowski ▴ 210
0
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0
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6.9k
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Answer: Answer: How to obtain distinct/uniqe rows from GenomicRanges object
21 months ago by jon.klonowski ▴ 210
0
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0
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6.9k
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Comment: Comment: How to obtain distinct/uniqe rows from GenomicRanges object
21 months ago by jon.klonowski ▴ 210
0
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0
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1.3k
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Comment: Comment: Mapping Mutations, Protein Domains, Exon structure on a Protein Figure/Visualiza
22 months ago by jon.klonowski ▴ 210
1
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3
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1.3k
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Mapping Mutations, Protein Domains, Exon structure on a Protein Figure/Visualization with annoations
mutation protein domain structure
22 months ago by jon.klonowski ▴ 210
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0
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1.9k
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Comment: Comment: Sample Level Filtering During GATK Germline Short Variant Discovery
2.5 years ago by jon.klonowski ▴ 210
2
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3
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1.9k
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Sample Level Filtering During GATK Germline Short Variant Discovery
Genotyping genomics vcf GATK germline
2.5 years ago by jon.klonowski ▴ 210
1
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0
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5.7k
views
Comment: Comment: bcftools query add header
updated 4 months ago by 153k • written 2.7 years ago by ▴ 210
0
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1
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1.3k
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Comment: Comment: Purpose of Seqinfo Circularity Attribute in GenomicRanges Objects
2.8 years ago by jon.klonowski ▴ 210
4
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4
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1.3k
views
Purpose of Seqinfo Circularity Attribute in GenomicRanges Objects
Seqinfo GenomeInfoDb Circularity GenomicRanges
updated 2.8 years ago by 11k • written 2.8 years ago by ▴ 210
1
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1
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33k
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Answer: Answer: Best way to query VCF for specific variants
2.9 years ago by jon.klonowski ▴ 210
0
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0
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3.4k
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Comment: Comment: biomaRt: Timeout on getBM().
3.2 years ago by jon.klonowski ▴ 210
4
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5
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3.4k
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biomaRt: Timeout on getBM().
ensembl biomart
3.2 years ago by jon.klonowski ▴ 210
0
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1
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3.4k
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Comment: Comment: biomaRt: Timeout on getBM().
3.2 years ago by jon.klonowski ▴ 210
1
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0
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14k
views
Comment: Comment: biomaRt: Timeout on getBM().
3.2 years ago by jon.klonowski ▴ 210
0
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0
replies
1.3k
views
VEP verisoning and GRCh37 vs GRCh38. conda/mamba/anaconda
ensembl genomics VEP GRCh37 conda
3.4 years ago by jon.klonowski ▴ 210
0
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0
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2.4k
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Comment: Comment: Installing VEP in conda
3.4 years ago by jon.klonowski ▴ 210
4
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5
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2.1k
views
How to choose output when using a "By" function from a TxDb object; GenomicFeatures R
TxDb GenomicFeatures genomics R
3.7 years ago by jon.klonowski ▴ 210
3
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0
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2.1k
views
Answer: Answer: How to choose output when using a "By" function from a TxDb object; GenomicFeatu
3.7 years ago by jon.klonowski ▴ 210
0
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1
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2.1k
views
Comment: Comment: How to choose output when using a "By" function from a TxDb object; GenomicFeatu
3.7 years ago by jon.klonowski ▴ 210
0
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0
replies
785
views
How to check for the most recent EnsDb Hsapiens verison?
genomics ensembl ensdb ensembldb
3.7 years ago by jon.klonowski ▴ 210
0
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0
replies
1.5k
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Comment: Comment: Command line VEP "Amino_acid" Output Column Inturperation: AA / AA * AA
3.7 years ago by jon.klonowski ▴ 210
2
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3
replies
1.5k
views
Command line VEP "Amino_acid" Output Column Inturperation: AA / AA * AA
VEP ensembl genetics genomics annotation
3.7 years ago by jon.klonowski ▴ 210
0
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0
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2.9k
views
Comment: Comment: How do I split a genomicrange on chromosome and strand?
3.8 years ago by jon.klonowski ▴ 210
0
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0
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1.6k
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Comment: Comment: how do you get an IN-FRAME deletion stop gain variant?
3.8 years ago by jon.klonowski ▴ 210
1
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3
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1.6k
views
how do you get an IN-FRAME deletion stop gain variant?
genomics annotation ensembl VEP genetics
3.8 years ago by jon.klonowski ▴ 210
1
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1
reply
1.6k
views
Answer: Answer: how do you get an IN-FRAME deletion stop gain variant?
3.8 years ago by jon.klonowski ▴ 210
0
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0
replies
995
views
What is a good Standardized Beta/standardized regression coefficient in a genetics study?
regression genetics genomics
updated 2.5 years ago by 45k • written 4.1 years ago by ▴ 210
0
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0
replies
20k
views
Comment: Comment: Pararellization in GATK 4
4.3 years ago by jon.klonowski ▴ 210
0
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1
reply
1.6k
views
gnomAD AF = 0 vs gnomAD AF = NA (gnomad V2)
annontation rare genomics variant gnomad
4.4 years ago by jon.klonowski ▴ 210
0
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0
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1.6k
views
Answer: Answer: gnomAD AF = 0 vs gnomAD AF = NA (gnomad V2)
4.4 years ago by jon.klonowski ▴ 210
1
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0
replies
1.8k
views
Answer: Answer: Merged Reference Panel using WES data
4.4 years ago by jon.klonowski ▴ 210
0
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0
replies
1.6k
views
Comment: Comment: gnomAD reports variants with "NA" allele count and allele frequency
4.4 years ago by jon.klonowski ▴ 210
0
votes
0
replies
951
views
UCSC parameters for converting between human genome builds
genomics bed ucsc genotyping
4.5 years ago by jon.klonowski ▴ 210
78 results • Page 1 of 2
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