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3
votes
1
reply
1.4k
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Answer: Answer: How to get normalized count table from DESeq?
updated 13 months ago by 10k • written 13 months ago by ▴ 680
1
vote
1
reply
380
views
Methods to virtually Knockout a gene from a network
Machine learning RNA-Seq Gene network interaction
updated 13 months ago by 3.1k • written 13 months ago by ▴ 680
1
vote
3
replies
3.2k
views
Working With Phastcons Files
galaxy
updated 23 months ago by 20 • written 9.8 years ago by ▴ 680
0
votes
1
reply
513
views
Annotate the K-mers of same length with TFs
TF Annotattion K-mers
updated 2.5 years ago by 12k • written 2.5 years ago by ▴ 680
0
votes
1
reply
688
views
Answer: A: How to find if our enhancer gene pair fall within TAD
2.5 years ago by ancient_learner ▴ 680
9
votes
4
replies
3.3k
views
Identifying Genes That Lie Either Side Of Intergenic Regions
ucsc
updated 2.7 years ago by 20 • written 9.7 years ago by ▴ 680
0
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1
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1.2k
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Comment: C: Choosing the cutoff for e-value when using very small Sequences
2.8 years ago by ancient_learner ▴ 680
0
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1
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1.2k
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Comment: C: Choosing the cutoff for e-value when using very small Sequences
2.8 years ago by ancient_learner ▴ 680
3
votes
5
replies
1.2k
views
Choosing the cutoff for e-value when using very small Sequences
Blastn evalue
2.8 years ago by ancient_learner ▴ 680
1
vote
1
reply
1.5k
views
Calculate statistically significant enrichment score for a specific transcription factor
R ChIP-Seq genome
updated 2.9 years ago by 20 • written 6.7 years ago by ▴ 680
0
votes
0
replies
21k
views
Comment: C: using python for pairwise alignment
updated 3.0 years ago by 37k • written 8.6 years ago by ▴ 680
2
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0
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3.6k
views
Answer: A: Cytoscape: Export all subnetworks to excel seperately
updated 3.1 years ago by 37k • written 8.6 years ago by ▴ 680
0
votes
0
replies
5.0k
views
Comment: C: microRNA transcription start site prediction
updated 3.1 years ago by 37k • written 8.7 years ago by ▴ 680
0
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1
reply
5.0k
views
Comment: C: microRNA transcription start site prediction
updated 3.1 years ago by 37k • written 8.7 years ago by ▴ 680
0
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1
reply
3.0k
views
Comment: C: Visualize reads in BAM file
updated 3.3 years ago by 37k • written 8.6 years ago by ▴ 680
0
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0
replies
15k
views
Comment: C: How To Find Unique Reads?
updated 3.3 years ago by 37k • written 9.3 years ago by ▴ 680
2
votes
6
replies
1.6k
views
Iterative trimming using bowtie
bowtie2 iterative trimming alignment ATAC-Seq
updated 3.9 years ago by 20 • written 4.0 years ago by ▴ 680
3
votes
0
replies
191k
views
Answer: A: How To Update R In Ubuntu ?
updated 4.0 years ago by 37k • written 9.1 years ago by ▴ 680
0
votes
1
reply
1.2k
views
Comment: C: Analysis pipeline for 3e Hi-C
4.0 years ago by ancient_learner ▴ 680
1
vote
3
replies
1.2k
views
Analysis pipeline for 3e Hi-C
Hi-C 3e Hi-C multi-enzyme digestion
4.0 years ago by ancient_learner ▴ 680
0
votes
0
replies
1.6k
views
Comment: C: Iterative trimming using bowtie
4.0 years ago by ancient_learner ▴ 680
0
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1
reply
1.6k
views
Comment: C: Iterative trimming using bowtie
4.0 years ago by ancient_learner ▴ 680
0
votes
1
reply
1.6k
views
Comment: C: Iterative trimming using bowtie
4.0 years ago by ancient_learner ▴ 680
1
vote
1
reply
14k
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Comment: C: Nextera Transposon Contamination
4.1 years ago by ancient_learner ▴ 680
0
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1
reply
9.9k
views
Comment: C: ATAC-seq DE analysis
4.1 years ago by ancient_learner ▴ 680
0
votes
1
reply
849
views
Identifying ago2 enriched genes under 2 different conditions
RIP-Seq DESeq2 rna-seq
4.8 years ago by ancient_learner ▴ 680
4
votes
2
replies
2.7k
views
Difference Between Chip-Seq And Biochip-Seq
chip-seq
updated 5.7 years ago by 20 • written 9.8 years ago by ▴ 680
3
votes
2
replies
3.6k
views
Cytoscape: Export all subnetworks to excel seperately
subnetworks cytoscape
updated 15 months ago by 37k • written 8.6 years ago by ▴ 680
0
votes
0
replies
2.2k
views
problem in bedtools pairtobed
bedtools
6.5 years ago by ancient_learner ▴ 680
0
votes
0
replies
2.2k
views
Comment: C: How to differentiate between two biological replicates
6.6 years ago by ancient_learner ▴ 680
0
votes
2
replies
2.2k
views
How to differentiate between two biological replicates
illumina biological replicates
6.6 years ago by ancient_learner ▴ 680
8
votes
5
replies
3.8k
views
Problem In Identifying Genomic Coordinates Of Mirna
mirna
updated 6.8 years ago by 20 • written 9.8 years ago by ▴ 680
0
votes
0
replies
1.4k
views
calculating the conservation between TADs with statistical significance
conservation topologically associating domains
6.9 years ago by ancient_learner ▴ 680
3
votes
3
replies
2.6k
views
obtain non-overlapping regions within the file
non-overlapping bedtools
updated 6.9 years ago by 14k • written 6.9 years ago by ▴ 680
0
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0
replies
10.0k
views
Comment: C: How Can I Accurately Identify Mirna Sequences From Small Rna Seq Results
7.0 years ago by ancient_learner ▴ 680
0
votes
0
replies
1.9k
views
Comment: C: Statistically significant TFBS for a particular region
7.8 years ago by ancient_learner ▴ 680
0
votes
1
reply
1.9k
views
Statistically significant TFBS for a particular region
statistical-significance TFBS
updated 7 months ago by 37k • written 7.8 years ago by ▴ 680
1
vote
1
reply
4.7k
views
How to deal with multiple probes for same gene while obtaining the co-expressed genes
microarray cladist coexpressed
updated 8.3 years ago by 96k • written 8.3 years ago by ▴ 680
0
votes
0
replies
5.6k
views
Comment: Comment: How to deal with the FPKM values for isoforms in RNA-seq for particular gene
updated 15 months ago by 37k • written 8.6 years ago by ▴ 680
6
votes
4
replies
5.6k
views
How to deal with the FPKM values for isoforms in RNA-seq for particular gene
isoforms RNA-Seq fpkm
updated 15 months ago by 37k • written 8.6 years ago by ▴ 680
0
votes
0
replies
3.0k
views
Comment: C: Chia-Pet Pipeline
8.6 years ago by ancient_learner ▴ 680
0
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1
reply
3.0k
views
Comment: Comment: Chia-Pet Pipeline
updated 15 months ago by 37k • written 8.6 years ago by ▴ 680
0
votes
0
replies
56k
views
Answer: A: what is the difference between single end and paired end in sequencing
8.6 years ago by ancient_learner ▴ 680
0
votes
1
reply
12k
views
Comment: C: Extract gene coordinates from GTF
8.6 years ago by ancient_learner ▴ 680
0
votes
1
reply
5.0k
views
Comment: C: microRNA transcription start site prediction
8.7 years ago by ancient_learner ▴ 680
0
votes
1
reply
37k
views
Comment: C: Plotting Density Of Snps On Chromosomes
8.8 years ago by ancient_learner ▴ 680
0
votes
1
reply
37k
views
Comment: C: Plotting Density Of Snps On Chromosomes
8.8 years ago by ancient_learner ▴ 680
2
votes
0
replies
1.4k
views
Comment: C: Downloading X. Laevis 3' Utrs In Bulk
8.9 years ago by ancient_learner ▴ 680
0
votes
0
replies
2.8k
views
Comment: C: Circular Genome Visualisation For Hg19?
8.9 years ago by ancient_learner ▴ 680
2
votes
0
replies
2.8k
views
Comment: C: Circular Genome Visualisation For Hg19?
8.9 years ago by ancient_learner ▴ 680
143 results • Page 1 of 3
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