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3
votes
5
replies
4.0k
views
Split VCF into separate VCFs by SNP count
vcf bcftools next-gen
written 3.2 years ago by ▴ 20
0
votes
0
replies
861
views
Comment: Comment: Calculate GQ for samples VCF
updated 2.4 years ago by 162k • written 2.4 years ago by ▴ 20
0
votes
2
replies
861
views
Calculate GQ for samples VCF
freebayes Linux VCF GATK
updated 2.4 years ago by 162k • written 2.4 years ago by ▴ 20
0
votes
0
replies
3.2k
views
Comment: Comment: miRDeep2 whitespaces error
2.6 years ago by timothy.delory ▴ 20
0
votes
0
replies
825
views
HaplotypeCaller Memory Optimization
calling GATK HPC variant
2.7 years ago by timothy.delory ▴ 20
0
votes
0
replies
679
views
Comment: Comment: Combine haploid fastq's into diploid "individuals"
2.8 years ago by timothy.delory ▴ 20
0
votes
2
replies
679
views
Combine haploid fastq's into diploid "individuals"
GATK pop-gen haplodiploid
2.8 years ago by timothy.delory ▴ 20
0
votes
1
reply
989
views
Comment: Comment: filtering repetitive regions with low quality/no snps in a vcf file
2.9 years ago by timothy.delory ▴ 20
0
votes
0
replies
844
views
Comment: Comment: Make info tag separate column VCF
updated 3.1 years ago by 44k • written 3.1 years ago by ▴ 20
0
votes
2
replies
844
views
Make info tag separate column VCF
vcf ANGSD
updated 3.1 years ago by 44k • written 3.1 years ago by ▴ 20
0
votes
0
replies
614
views
Watterson Estimate VCFs with different coverage
software vcf popgen
3.1 years ago by timothy.delory ▴ 20
0
votes
0
replies
678
views
Artificially high rho outputs from LDHat
rho VCF LDHat popgen
3.2 years ago by timothy.delory ▴ 20
0
votes
0
replies
4.0k
views
Comment: Comment: Split VCF into separate VCFs by SNP count
3.2 years ago by timothy.delory ▴ 20
0
votes
1
reply
2.6k
views
Comment: Comment: Problems in running LDHAT
3.2 years ago by timothy.delory ▴ 20
0
votes
0
replies
856
views
Comment: C: Allow for failed wildcards in Snakemake workflow
3.2 years ago by timothy.delory ▴ 20
0
votes
1
reply
1.3k
views
How do I organize snakemake when not all jobs successfully output files from previous rule?
snakemake workflow python
3.2 years ago by timothy.delory ▴ 20
0
votes
0
replies
495
views
Population Genetics WGS: how do I know if I have too few individuals?
wgs sequencing next-gen
3.3 years ago by timothy.delory ▴ 20
0
votes
0
replies
1.5k
views
Comment: C: Understanding Resource Job Allocation
3.3 years ago by timothy.delory ▴ 20
3
votes
2
replies
1.5k
views
Understanding Resource Job Allocation
snakemake slurm memory workflow
updated 3.3 years ago by 19k • written 3.3 years ago by ▴ 20
0
votes
0
replies
802
views
LD Complete lookup table problem
LD Pop_Gen LDhat
3.6 years ago by timothy.delory ▴ 20
0
votes
1
reply
1.2k
views
Comment: A: GATK AnalyzeCovariates No improvement/Sequencing Bias Removal
updated 3.9 years ago by 142k • written 3.9 years ago by ▴ 20
1
vote
3
replies
1.2k
views
GATK AnalyzeCovariates No improvement/Sequencing Bias Removal
GATK BQSR
3.9 years ago by timothy.delory ▴ 20
0
votes
0
replies
2.7k
views
Comment: C: Snakemake Error (incorrect wildcard use)
4.1 years ago by timothy.delory ▴ 20
2
votes
3
replies
2.7k
views
Snakemake Error (incorrect wildcard use)
snakemake software error
4.2 years ago by timothy.delory ▴ 20
24 results • Page 1 of 1
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