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2
votes
6
replies
2.8k
views
calculate nucleotides frequencies from mapped reads in a BAM file
RNA-seq
updated 4.0 years ago by 9.0k • written 4.0 years ago by ▴ 140
1
vote
0
replies
875
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Is there a public database where I could download mRNA seq (transcriptome) data of 293T cells
RNA-seq Database Public
4.0 years ago by xiaoleiusc ▴ 140
0
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0
replies
21k
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Comment: Comment: How to work out Z score for heatmaps for RNA seq dataset
4.1 years ago by xiaoleiusc ▴ 140
0
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1
reply
21k
views
Comment: Comment: How to work out Z score for heatmaps for RNA seq dataset
4.1 years ago by xiaoleiusc ▴ 140
0
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0
replies
46k
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Comment: Comment: Why Does Rna-Seq Read Count Fit Poisson Distribution?
4.1 years ago by xiaoleiusc ▴ 140
0
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0
replies
5.5k
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Comment: Comment: Forge a BSgenome data package
4.1 years ago by xiaoleiusc ▴ 140
0
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1
reply
3.0k
views
Comment: Comment: Loading a genome in BSgenome
4.1 years ago by xiaoleiusc ▴ 140
0
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0
replies
16k
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Comment: Comment: Script To Calculate Dinucleotide Frequency For Many Sequences
4.0 years ago by xiaoleiusc ▴ 140
0
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0
replies
16k
views
Comment: Comment: Script To Calculate Dinucleotide Frequency For Many Sequences
4.1 years ago by xiaoleiusc ▴ 140
1
vote
1
reply
977
views
BSgenomes for HIV viruses
CLIP-seq RNA-Seq CLIP-Seq
updated 4.2 years ago by 89k • written 4.2 years ago by ▴ 140
1
vote
0
replies
15k
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Comment: Comment: How Can I Split Paired End Fastq Files
4.3 years ago by xiaoleiusc ▴ 140
0
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0
replies
15k
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Comment: Comment: How Can I Split Paired End Fastq Files
4.3 years ago by xiaoleiusc ▴ 140
0
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0
replies
11k
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Comment: Comment: Split BAM file into two subsamples
4.3 years ago by xiaoleiusc ▴ 140
0
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0
replies
11k
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Comment: Comment: Split BAM file into two subsamples
4.3 years ago by xiaoleiusc ▴ 140
0
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0
replies
4.8k
views
Comment: Comment: what is the deal with bioconda?
4.5 years ago by xiaoleiusc ▴ 140
2
votes
2
replies
1.6k
views
tools for calculating nucleotide composition of a gene
NGS
4.5 years ago by xiaoleiusc ▴ 140
0
votes
0
replies
5.3k
views
Comment: Comment: Visualize nucleotides for every position in R
4.5 years ago by xiaoleiusc ▴ 140
0
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0
replies
4.9k
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Comment: C: convert DNA FASTA file to RNA FASTA file
4.7 years ago by xiaoleiusc ▴ 140
0
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0
replies
4.9k
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Comment: C: convert DNA FASTA file to RNA FASTA file
4.7 years ago by xiaoleiusc ▴ 140
0
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0
replies
4.9k
views
Comment: C: convert DNA FASTA file to RNA FASTA file
4.7 years ago by xiaoleiusc ▴ 140
2
votes
6
replies
4.9k
views
convert DNA FASTA file to RNA FASTA file
RNA-Seq ChIP-Seq sequence
updated 4.7 years ago by 13k • written 4.7 years ago by ▴ 140
0
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0
replies
5.5k
views
Comment: C: chipseq -- annotate peaks with lncRNA
4.7 years ago by xiaoleiusc ▴ 140
0
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0
replies
1.2k
views
Comment: C: R error: could not find function "makeTxDbFromUCSC"
4.7 years ago by xiaoleiusc ▴ 140
2
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2
replies
1.2k
views
R error: could not find function "makeTxDbFromUCSC"
R RNA-Seq
4.7 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
2.0k
views
Comment: C: HIV NL4-3 transcriptome fasta
4.7 years ago by xiaoleiusc ▴ 140
0
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0
replies
2.4k
views
Comment: C: PARalyzer error: * is not found in the .2bit file
updated 4.9 years ago by 45k • written 6.3 years ago by ▴ 140
0
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0
replies
2.4k
views
Comment: C: PARalyzer error: * is not found in the .2bit file
updated 4.9 years ago by 45k • written 6.3 years ago by ▴ 140
0
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0
replies
2.4k
views
Comment: C: PARalyzer error: * is not found in the .2bit file
updated 4.9 years ago by 45k • written 4.9 years ago by ▴ 140
0
votes
0
replies
4.7k
views
Comment: C: Bowtie alignment run too long and not finishing job
5.2 years ago by xiaoleiusc ▴ 140
0
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1
reply
4.7k
views
Comment: C: Bowtie alignment run too long and not finishing job
5.2 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
4.7k
views
Comment: C: Bowtie alignment run too long and not finishing job
5.2 years ago by xiaoleiusc ▴ 140
3
votes
6
replies
4.7k
views
Bowtie alignment run too long and not finishing job
RNA-Seq ChIP-Seq
5.2 years ago by xiaoleiusc ▴ 140
0
votes
0
replies
1.0k
views
Motif discovery of RNA binding proteins
CLIP-Seq RNA-Seq
5.2 years ago by xiaoleiusc ▴ 140
5
votes
7
replies
2.0k
views
Collapse mapped reads in sorted bam file based on the start and end position coordinates
rna-seq
updated 5.2 years ago by 154k • written 5.2 years ago by ▴ 140
0
votes
0
replies
2.0k
views
Comment: C: Collapse mapped reads in sorted bam file based on the start and end position coo
5.2 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
2.0k
views
Comment: C: Collapse mapped reads in sorted bam file based on the start and end position coo
5.2 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
1.4k
views
Comment: C: base composition of human genome
5.2 years ago by xiaoleiusc ▴ 140
5
votes
3
replies
1.4k
views
base composition of human genome
genome
updated 5.2 years ago by 13k • written 5.2 years ago by ▴ 140
5
votes
7
replies
4.3k
views
IGV viewer could not display genome sequences correctly
RNA-Seq
updated 5.6 years ago by ▴ 300 • written 5.8 years ago by ▴ 140
0
votes
0
replies
9.9k
views
Comment: C: Parameters That Determine Meme Speed And Homer Speed For Motif Discovery?
5.6 years ago by xiaoleiusc ▴ 140
3
votes
3
replies
1.6k
views
Why bowtie report same number of reads with different - k parameters?
RNA-Seq CLIP-seq
5.6 years ago by xiaoleiusc ▴ 140
1
vote
0
replies
1.6k
views
Comment: C: Why bowtie report same number of reads with different - k parameters?
5.6 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
1.8k
views
Comment: C: How to get multi mappers from bowtie 1
5.6 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
3.6k
views
Comment: C: GTF file for HIV strain pNL4-3
5.6 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
12k
views
Comment: C: GTF/GFF for non-coding RNA
5.6 years ago by xiaoleiusc ▴ 140
0
votes
2
replies
4.4k
views
Comment: C: get gene biotype for hg38 refseq
5.6 years ago by xiaoleiusc ▴ 140
0
votes
0
replies
11k
views
Comment: C: HIV : gtf or gff annotation
5.6 years ago by xiaoleiusc ▴ 140
0
votes
0
replies
4.9k
views
Comment: C: How to generate a pie chart of genomic annotations of ChIP peaks
5.6 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
2.4k
views
Comment: C: PARalyzer error: * is not found in the .2bit file
5.7 years ago by xiaoleiusc ▴ 140
0
votes
0
replies
1.6k
views
Comment: C: filter out reads with specific properties from bam file
5.7 years ago by xiaoleiusc ▴ 140
122 results • Page 2 of 3
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