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0
votes
0
replies
299
views
Sequence alignment similarity score including weakly conserved groups
alignment protein sequence
updated 3 months ago by 43k • written 3 months ago by ▴ 80
2
votes
5
replies
603
views
Sequence alignment matrix
alignment protein sequence
updated 3 months ago by ★ 27k • written 3 months ago by ▴ 80
1
vote
2
replies
324
views
Pymol movie - ligand and receptor binding.
Pymol protein structure PDB
3 months ago by Hansen_869 ▴ 80
0
votes
1
reply
585
views
Ligand-receptor interaction tool
binding Protein ligand pymol carbohydrate
15 months ago by Hansen_869 ▴ 80
6
votes
7
replies
2.6k
views
2D structure of a custom protein (not in any databases) from a PDB file.
PDB protein-structure Pymol
updated 6 months ago by ★ 2.0k • written 15 months ago by ▴ 80
1
vote
2
replies
907
views
Protein/peptide characterization/properties tools
protein peptide characterization properties
written 3.6 years ago by ▴ 80
0
votes
5
replies
916
views
Finding potential carbohydrate binding site on protein
binding Protein ligand carbohydrate
21 months ago by Hansen_869 ▴ 80
8
votes
8
replies
16k
views
BWA index - is it neccesary?
bwa index
updated 23 months ago by 82k • written 4.5 years ago by ▴ 80
0
votes
1
reply
778
views
Change color of CGO object after creation in PyMol
Pymol color cgo
2.6 years ago by Hansen_869 ▴ 80
0
votes
1
reply
2.3k
views
BLAST error: Input db vol size does not match lmdb vol size
BLAST Database Error Protein NR
3.2 years ago by Hansen_869 ▴ 80
0
votes
22
replies
2.1k
views
Specifying database path in BLAST standalone
blast path standalone
3.2 years ago by Hansen_869 ▴ 80
0
votes
2
replies
1.0k
views
Connecting two PDB structures in Pymol
PDB Structures Connect
3.2 years ago by Hansen_869 ▴ 80
0
votes
0
replies
648
views
Pymol homology modelling
homology modelling pymol
3.2 years ago by Hansen_869 ▴ 80
0
votes
4
replies
4.3k
views
Link two proteins in Pymol
pymol link proteins
3.2 years ago by Hansen_869 ▴ 80
0
votes
10
replies
1.4k
views
comparative gene quantification, problem with COGs and hypothetical proteins.
gene abundance TPM COG
4.3 years ago by Hansen_869 ▴ 80
1
vote
3
replies
1.2k
views
Accounting for differences in FASTQ-file size, when comparing metagenomic gene abundance between samples
gene metagenomics TPM Reads
updated 4.3 years ago by ▴ 190 • written 4.3 years ago by ▴ 80
0
votes
0
replies
694
views
Finding depth of genes
snakemake depth prokka samtools
updated 4.4 years ago by 20 • written 4.6 years ago by ▴ 80
1
vote
4
replies
2.7k
views
Counting abundance of each gene in SAM/BAM file
Samtools Abundance gene bam sam
4.5 years ago by Hansen_869 ▴ 80
5
votes
7
replies
1.9k
views
6 follow
Linking bacterial taxonomy to predicted genes with Prokka
prokka bwa maxbin
4.5 years ago by Hansen_869 ▴ 80
0
votes
6
replies
1.6k
views
Combining gene depth data (bwa alignment) and gene categorization data (EggNOG)
eggnog bwa
4.5 years ago by Hansen_869 ▴ 80
12
votes
7
replies
9.5k
views
Running python script in Snakemake without input/output
Snakemake
updated 4.5 years ago by ★ 2.1k • written 4.5 years ago by ▴ 80
0
votes
10
replies
4.7k
views
Using Eggnog-mapper to categorize genes according to OG, without gene prediction.
eggnog prokka annotation
updated 4.5 years ago by ★ 3.2k • written 4.5 years ago by ▴ 80
0
votes
4
replies
1.1k
views
Interpreting bam-files from Prokka annotation
bam samtools prokka bwa
4.6 years ago by Hansen_869 ▴ 80
0
votes
0
replies
825
views
Unknown input filename in Snakemake
Snakemake
4.6 years ago by Hansen_869 ▴ 80
0
votes
5
replies
1.7k
views
Taxonomic assignment of bins found by Maxbin2
Maxbin2 bins taxonomy
updated 4.6 years ago by ★ 27k • written 4.6 years ago by ▴ 80
0
votes
5
replies
2.5k
views
concatenating FASTQ forward and reverse reads in Snakemake
FASTQ Concatenate bash forward reads
updated 4.7 years ago by ★ 2.1k • written 4.7 years ago by ▴ 80
2
votes
13
replies
2.0k
views
Re-mapping contigs or predicted genes?
alignment genome sequence FASTQ FASTA
updated 4.7 years ago by 21k • written 4.7 years ago by ▴ 80
27 results • Page 1 of 1
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