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Comment: Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
9 weeks ago by blackadder ▴ 30
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2
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248
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Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
Python Snakemake
9 weeks ago by blackadder ▴ 30
0
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0
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843
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Comment: Comment: Problematic fastq files...How can we trust them?
4 months ago by blackadder ▴ 30
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2
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843
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Comment: Comment: Problematic fastq files...How can we trust them?
4 months ago by blackadder ▴ 30
12
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6
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843
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Problematic fastq files...How can we trust them?
fastq
4 months ago by blackadder ▴ 30
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0
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461
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Comment: Comment: BBDuk error: with these 4 lines....
4 months ago by blackadder ▴ 30
6
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3
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461
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BBDuk error: with these 4 lines....
BBDUK trimming java
4 months ago by blackadder ▴ 30
3
votes
8
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1.0k
views
Best command line tool for downloading sequencing reads
enaBrowserTools reads Fasterq-dump sequencing
updated 6 months ago by 81k • written 6 months ago by ▴ 30
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0
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1.0k
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Comment: Comment: Best command line tool for downloading sequencing reads
6 months ago by blackadder ▴ 30
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0
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1.0k
views
Comment: Comment: Best command line tool for downloading sequencing reads
6 months ago by blackadder ▴ 30
0
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1
reply
1.0k
views
Comment: Comment: Best command line tool for downloading sequencing reads
6 months ago by blackadder ▴ 30
1
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0
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352
views
Snakemake cluster status script for qsub
snakemake cluster
updated 10 months ago by 43k • written 10 months ago by ▴ 30
0
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1
reply
622
views
Snakemake benchmark error
snakemake benchmark
updated 15 months ago by 22k • written 15 months ago by ▴ 30
4
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5
replies
845
views
Get middle part of a url
Unix bash
updated 21 months ago by 21k • written 21 months ago by ▴ 30
0
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0
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845
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Comment: Comment: Get middle part of a url
21 months ago by blackadder ▴ 30
0
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2
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845
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Comment: Comment: Get middle part of a url
21 months ago by blackadder ▴ 30
0
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0
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974
views
Comment: Comment: Snakemake cluster execution error
22 months ago by blackadder ▴ 30
0
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3
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974
views
Snakemake cluster execution error
snakemake cluster conda
updated 22 months ago by 43k • written 22 months ago by ▴ 30
0
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0
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722
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Comment: Comment: Get bulk ftp links from ENA
22 months ago by blackadder ▴ 30
0
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1
reply
722
views
Comment: Comment: Get bulk ftp links from ENA
22 months ago by blackadder ▴ 30
2
votes
5
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722
views
Get bulk ftp links from ENA
ENA ftp assembly fasta
22 months ago by blackadder ▴ 30
0
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1
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1.3k
views
Comment: Comment: How to remove everything before a specific character in a column
24 months ago by blackadder ▴ 30
0
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1
reply
1.3k
views
Comment: Comment: How to remove everything before a specific character in a column
24 months ago by blackadder ▴ 30
8
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11
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1.3k
views
How to remove everything before a specific character in a column
unix bash awk sed
updated 24 months ago by 141k • written 24 months ago by ▴ 30
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0
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1.3k
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Comment: Comment: How to remove everything before a specific character in a column
24 months ago by blackadder ▴ 30
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0
replies
1.3k
views
Comment: Comment: How to remove everything before a specific character in a column
24 months ago by blackadder ▴ 30
0
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1
reply
1.5k
views
Comment: Comment: How to match 2 columns from 2 different tsv files?
24 months ago by blackadder ▴ 30
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1
reply
1.5k
views
Comment: Comment: How to match 2 columns from 2 different tsv files?
updated 24 months ago by 43k • written 24 months ago by ▴ 30
0
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1
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1.5k
views
Comment: Comment: How to match 2 columns from 2 different tsv files?
24 months ago by blackadder ▴ 30
4
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10
replies
1.5k
views
How to match 2 columns from 2 different tsv files?
bash unix pattern-matching
updated 24 months ago by 43k • written 24 months ago by ▴ 30
0
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0
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942
views
Comment: Comment: Can I execute a snakemake rule only once?
2.2 years ago by blackadder ▴ 30
3
votes
2
replies
942
views
Can I execute a snakemake rule only once?
Snakemake GTDB-TK Kraken2
2.2 years ago by blackadder ▴ 30
4
votes
11
replies
4.4k
views
Is it possible to pass command line arguments to python script in snakemake?
snakemake python
updated 21 months ago by • 0 • written 2.3 years ago by ▴ 30
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0
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4.4k
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Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
2.3 years ago by blackadder ▴ 30
0
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1
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4.4k
views
Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
2.3 years ago by blackadder ▴ 30
0
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1
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4.4k
views
Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
2.3 years ago by blackadder ▴ 30
0
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0
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4.4k
views
Comment: Comment: Is it possible to pass command line arguments to python script in snakemake?
2.3 years ago by blackadder ▴ 30
3
votes
5
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2.1k
views
Snakemake command line arguments
Snakemake
updated 2.3 years ago by ★ 2.1k • written 2.3 years ago by ▴ 30
0
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0
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2.1k
views
Comment: Comment: Snakemake command line arguments
2.3 years ago by blackadder ▴ 30
0
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0
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2.1k
views
Comment: Comment: Snakemake command line arguments
2.3 years ago by blackadder ▴ 30
0
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0
replies
2.9k
views
Comment: Comment: Snakemake Megahit error
2.4 years ago by blackadder ▴ 30
0
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2
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2.9k
views
Comment: Comment: Snakemake Megahit error
2.4 years ago by blackadder ▴ 30
0
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1
reply
2.9k
views
Comment: Comment: Snakemake Megahit error
2.4 years ago by blackadder ▴ 30
0
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1
reply
2.9k
views
Comment: Comment: Snakemake Megahit error
2.4 years ago by blackadder ▴ 30
0
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0
replies
2.9k
views
Comment: Comment: Snakemake Megahit error
2.4 years ago by blackadder ▴ 30
0
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1
reply
2.9k
views
Comment: Comment: Snakemake Megahit error
2.4 years ago by blackadder ▴ 30
2
votes
17
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2.9k
views
Snakemake Megahit error
megahit Snakemake
2.4 years ago by blackadder ▴ 30
3
votes
1
reply
1.4k
views
How can I load numerous files from a config file in Snakemake? Is it worth it ?
Snakemake
updated 2.5 years ago by 11k • written 2.5 years ago by ▴ 30
3
votes
1
reply
1.3k
views
Error in vg : vg Assertion `reference_for.count(fasta_contig)' failed.
vg variation graph vgteam
updated 4.4 years ago by ▴ 360 • written 4.4 years ago by ▴ 30
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