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3
replies
1.3k
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Combining distance matricies between multiple aligned genes into final distance matrix
phylogeny distance alignment
4.4 years ago by robert.murphy ▴ 110
0
votes
1
reply
938
views
Estimating error rate across my 16S MiSeq amplicon sequencing
sequencing amplicon MiSeq error
updated 4.4 years ago by 3.9k • written 4.4 years ago by ▴ 110
0
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1
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1.5k
views
Comment: Comment: How to interpret min-hash values in phylogeny
4.4 years ago by robert.murphy ▴ 110
0
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3
replies
1.5k
views
How to interpret min-hash values in phylogeny
phylogeny mash alignment
updated 4.4 years ago by 35k • written 4.4 years ago by ▴ 110
0
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0
replies
1.3k
views
Comment: Comment: Add all non overlapping genes/transcripts from one gtf to another with bedtools
4.4 years ago by robert.murphy ▴ 110
0
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1
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1.3k
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Comment: Comment: Add all non overlapping genes/transcripts from one gtf to another with bedtools
4.4 years ago by robert.murphy ▴ 110
0
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4
replies
1.3k
views
Add all non overlapping genes/transcripts from one gtf to another with bedtools intersect
bedtools annotation gtf
4.4 years ago by robert.murphy ▴ 110
0
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1
reply
2.4k
views
Comment: Comment: Whole genome species clustering
4.4 years ago by robert.murphy ▴ 110
8
votes
7
replies
2.4k
views
Whole genome species clustering
phylogeny assembly phylogenetics
updated 2.1 years ago by ▴ 10 • written 4.4 years ago by ▴ 110
0
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0
replies
2.4k
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Comment: Comment: Whole genome species clustering
4.4 years ago by robert.murphy ▴ 110
0
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0
replies
7.1k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
4.4 years ago by robert.murphy ▴ 110
0
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1
reply
7.1k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
4.4 years ago by robert.murphy ▴ 110
0
votes
0
replies
924
views
Comment: Comment: 16S Barcoding long and short sequences return different BLAST results
4.4 years ago by robert.murphy ▴ 110
0
votes
2
replies
924
views
16S Barcoding long and short sequences return different BLAST results
barcoding 16S
4.4 years ago by robert.murphy ▴ 110
0
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1
reply
7.1k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
4.4 years ago by robert.murphy ▴ 110
0
votes
1
reply
7.1k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
4.4 years ago by robert.murphy ▴ 110
0
votes
1
reply
7.1k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
4.4 years ago by robert.murphy ▴ 110
0
votes
1
reply
2.1k
views
Comment: Comment: How to solve multiple CDS features with same locus tag in EMBL format
4.5 years ago by robert.murphy ▴ 110
2
votes
20
replies
7.1k
views
Converting Braker2 gtf output to gff then genbank
annotation
4.4 years ago by robert.murphy ▴ 110
0
votes
1
reply
2.1k
views
Comment: Comment: How to solve multiple CDS features with same locus tag in EMBL format
4.5 years ago by robert.murphy ▴ 110
2
votes
5
replies
2.1k
views
How to solve multiple CDS features with same locus tag in EMBL format
annotation embl
updated 4.5 years ago by 154k • written 4.5 years ago by ▴ 110
0
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0
replies
7.1k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
4.5 years ago by robert.murphy ▴ 110
0
votes
0
replies
7.1k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
4.5 years ago by robert.murphy ▴ 110
0
votes
1
reply
7.1k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
4.5 years ago by robert.murphy ▴ 110
0
votes
1
reply
7.1k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
4.5 years ago by robert.murphy ▴ 110
0
votes
1
reply
7.1k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
4.5 years ago by robert.murphy ▴ 110
2
votes
4
replies
1.9k
views
GTF format feature definitions
annotation
updated 4.5 years ago by 22k • written 4.5 years ago by ▴ 110
0
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1
reply
1.9k
views
Comment: Comment: GTF format feature definitions
4.5 years ago by robert.murphy ▴ 110
0
votes
0
replies
556
views
Should one keep softmasking when combining gff+fasta to gbk format?
annotation
4.5 years ago by robert.murphy ▴ 110
0
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1
reply
2.2k
views
Comment: C: BBMap not mapping reads to sequences known to exist in reference
4.6 years ago by robert.murphy ▴ 110
0
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0
replies
463
views
Using Maker to map foward annotations from reference gff
annotation
4.6 years ago by robert.murphy ▴ 110
0
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1
reply
4.9k
views
Comment: C: Less and less genes predicted with each iteration of SNAP/MAKER
4.6 years ago by robert.murphy ▴ 110
0
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9
replies
2.2k
views
BBMap not mapping reads to sequences known to exist in reference
alignment
updated 4.6 years ago by 154k • written 4.6 years ago by ▴ 110
0
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1
reply
2.2k
views
Comment: C: BBMap not mapping reads to sequences known to exist in reference
4.6 years ago by robert.murphy ▴ 110
0
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1
reply
2.2k
views
Comment: C: BBMap not mapping reads to sequences known to exist in reference
4.6 years ago by robert.murphy ▴ 110
0
votes
1
reply
862
views
Comment: C: Can you use high quallity annotation of very closely related to annotation novel
4.6 years ago by robert.murphy ▴ 110
0
votes
3
replies
862
views
Can you use high quallity annotation of very closely related to annotation novel genome
annotation
4.6 years ago by robert.murphy ▴ 110
0
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0
replies
1.9k
views
Comment: C: Mapping a short primer sequence to a whole genome
4.6 years ago by robert.murphy ▴ 110
0
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1
reply
1.9k
views
Comment: C: Mapping a short primer sequence to a whole genome
4.6 years ago by robert.murphy ▴ 110
0
votes
5
replies
1.9k
views
Mapping a short primer sequence to a whole genome
alignment
updated 4.6 years ago by 8.7k • written 4.6 years ago by ▴ 110
0
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1
reply
1.4k
views
Comment: C: Does BBDUK remove "N" bases?
4.7 years ago by robert.murphy ▴ 110
2
votes
4
replies
1.4k
views
Does BBDUK remove "N" bases?
Assembly
updated 4.7 years ago by 154k • written 4.7 years ago by ▴ 110
0
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10
replies
2.0k
views
Blastn on illumina reads for contamination detection before or after quality filtering?
Assembly
updated 4.7 years ago by 20 • written 4.9 years ago by ▴ 110
0
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1
reply
9.3k
views
Comment: C: bbmap split paired-end reads back into separated fastq files?
4.7 years ago by robert.murphy ▴ 110
0
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1
reply
9.3k
views
Comment: C: bbmap split paired-end reads back into separated fastq files?
4.7 years ago by robert.murphy ▴ 110
0
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0
replies
1.6k
views
Comment: C: Will coverage downsize of metagenomeic data drastically effect assembly?
4.8 years ago by robert.murphy ▴ 110
0
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1
reply
1.6k
views
Comment: C: Will coverage downsize of metagenomeic data drastically effect assembly?
4.8 years ago by robert.murphy ▴ 110
0
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1
reply
1.6k
views
Comment: C: Will coverage downsize of metagenomeic data drastically effect assembly?
4.8 years ago by robert.murphy ▴ 110
4
votes
9
replies
1.6k
views
Will coverage downsize of metagenomeic data drastically effect assembly?
Assembly
updated 4.8 years ago by ★ 30k • written 4.8 years ago by ▴ 110
0
votes
1
reply
2.8k
views
Comment: C: Do you NEED to bin a metagenome into MAGs?
4.8 years ago by robert.murphy ▴ 110
181 results • Page 2 of 4
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