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0
votes
3
replies
804
views
Combining distance matricies between multiple aligned genes into final distance matrix
phylogeny distance alignment
2.9 years ago by robert.murphy ▴ 80
0
votes
1
reply
676
views
Estimating error rate across my 16S MiSeq amplicon sequencing
sequencing amplicon MiSeq error
updated 2.9 years ago by 3.6k • written 2.9 years ago by ▴ 80
0
votes
1
reply
958
views
Comment: Comment: How to interpret min-hash values in phylogeny
3.0 years ago by robert.murphy ▴ 80
0
votes
3
replies
958
views
How to interpret min-hash values in phylogeny
phylogeny mash alignment
updated 3.0 years ago by 35k • written 3.0 years ago by ▴ 80
0
votes
0
replies
934
views
Comment: Comment: Add all non overlapping genes/transcripts from one gtf to another with bedtools
3.0 years ago by robert.murphy ▴ 80
0
votes
1
reply
934
views
Comment: Comment: Add all non overlapping genes/transcripts from one gtf to another with bedtools
3.0 years ago by robert.murphy ▴ 80
0
votes
4
replies
934
views
Add all non overlapping genes/transcripts from one gtf to another with bedtools intersect
bedtools annotation gtf
3.0 years ago by robert.murphy ▴ 80
0
votes
1
reply
1.5k
views
Comment: Comment: Whole genome species clustering
3.0 years ago by robert.murphy ▴ 80
8
votes
7
replies
1.5k
views
Whole genome species clustering
phylogeny assembly phylogenetics
updated 8 months ago by ▴ 10 • written 3.0 years ago by ▴ 80
0
votes
0
replies
1.5k
views
Comment: Comment: Whole genome species clustering
3.0 years ago by robert.murphy ▴ 80
0
votes
0
replies
4.7k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
3.0 years ago by robert.murphy ▴ 80
0
votes
1
reply
4.7k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
3.0 years ago by robert.murphy ▴ 80
0
votes
0
replies
676
views
Comment: Comment: 16S Barcoding long and short sequences return different BLAST results
3.0 years ago by robert.murphy ▴ 80
0
votes
2
replies
676
views
16S Barcoding long and short sequences return different BLAST results
barcoding 16S
3.0 years ago by robert.murphy ▴ 80
0
votes
1
reply
4.7k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
3.0 years ago by robert.murphy ▴ 80
0
votes
1
reply
4.7k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
3.0 years ago by robert.murphy ▴ 80
0
votes
1
reply
4.7k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
3.0 years ago by robert.murphy ▴ 80
0
votes
1
reply
1.3k
views
Comment: Comment: How to solve multiple CDS features with same locus tag in EMBL format
3.0 years ago by robert.murphy ▴ 80
2
votes
20
replies
4.7k
views
Converting Braker2 gtf output to gff then genbank
annotation
3.0 years ago by robert.murphy ▴ 80
0
votes
1
reply
1.3k
views
Comment: Comment: How to solve multiple CDS features with same locus tag in EMBL format
3.0 years ago by robert.murphy ▴ 80
2
votes
5
replies
1.3k
views
How to solve multiple CDS features with same locus tag in EMBL format
annotation embl
updated 3.0 years ago by 141k • written 3.0 years ago by ▴ 80
0
votes
0
replies
4.7k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
3.0 years ago by robert.murphy ▴ 80
0
votes
0
replies
4.7k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
3.0 years ago by robert.murphy ▴ 80
0
votes
1
reply
4.7k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
3.0 years ago by robert.murphy ▴ 80
0
votes
1
reply
4.7k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
3.0 years ago by robert.murphy ▴ 80
0
votes
1
reply
4.7k
views
Comment: Comment: Converting Braker2 gtf output to gff then genbank
3.0 years ago by robert.murphy ▴ 80
2
votes
4
replies
1.2k
views
GTF format feature definitions
annotation
updated 3.1 years ago by 19k • written 3.1 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Comment: Comment: GTF format feature definitions
3.1 years ago by robert.murphy ▴ 80
0
votes
0
replies
411
views
Should one keep softmasking when combining gff+fasta to gbk format?
annotation
3.1 years ago by robert.murphy ▴ 80
0
votes
1
reply
1.3k
views
Comment: C: BBMap not mapping reads to sequences known to exist in reference
3.1 years ago by robert.murphy ▴ 80
0
votes
0
replies
337
views
Using Maker to map foward annotations from reference gff
annotation
3.1 years ago by robert.murphy ▴ 80
0
votes
1
reply
3.1k
views
Comment: C: Less and less genes predicted with each iteration of SNAP/MAKER
3.1 years ago by robert.murphy ▴ 80
0
votes
9
replies
1.3k
views
BBMap not mapping reads to sequences known to exist in reference
alignment
updated 3.1 years ago by 141k • written 3.1 years ago by ▴ 80
0
votes
1
reply
1.3k
views
Comment: C: BBMap not mapping reads to sequences known to exist in reference
3.1 years ago by robert.murphy ▴ 80
0
votes
1
reply
1.3k
views
Comment: C: BBMap not mapping reads to sequences known to exist in reference
3.1 years ago by robert.murphy ▴ 80
0
votes
1
reply
601
views
Comment: C: Can you use high quallity annotation of very closely related to annotation novel
3.1 years ago by robert.murphy ▴ 80
0
votes
3
replies
601
views
Can you use high quallity annotation of very closely related to annotation novel genome
annotation
3.1 years ago by robert.murphy ▴ 80
0
votes
0
replies
1.1k
views
Comment: C: Mapping a short primer sequence to a whole genome
3.2 years ago by robert.murphy ▴ 80
0
votes
1
reply
1.1k
views
Comment: C: Mapping a short primer sequence to a whole genome
3.2 years ago by robert.murphy ▴ 80
0
votes
5
replies
1.1k
views
Mapping a short primer sequence to a whole genome
alignment
updated 3.2 years ago by 8.4k • written 3.2 years ago by ▴ 80
0
votes
1
reply
959
views
Comment: C: Does BBDUK remove "N" bases?
3.2 years ago by robert.murphy ▴ 80
2
votes
4
replies
959
views
Does BBDUK remove "N" bases?
Assembly
updated 3.2 years ago by 141k • written 3.2 years ago by ▴ 80
0
votes
10
replies
1.4k
views
Blastn on illumina reads for contamination detection before or after quality filtering?
Assembly
updated 3.3 years ago by 20 • written 3.4 years ago by ▴ 80
0
votes
1
reply
7.0k
views
Comment: C: bbmap split paired-end reads back into separated fastq files?
3.3 years ago by robert.murphy ▴ 80
0
votes
1
reply
7.0k
views
Comment: C: bbmap split paired-end reads back into separated fastq files?
3.3 years ago by robert.murphy ▴ 80
0
votes
0
replies
945
views
Comment: C: Will coverage downsize of metagenomeic data drastically effect assembly?
3.4 years ago by robert.murphy ▴ 80
0
votes
1
reply
945
views
Comment: C: Will coverage downsize of metagenomeic data drastically effect assembly?
3.4 years ago by robert.murphy ▴ 80
0
votes
1
reply
945
views
Comment: C: Will coverage downsize of metagenomeic data drastically effect assembly?
3.4 years ago by robert.murphy ▴ 80
4
votes
9
replies
945
views
Will coverage downsize of metagenomeic data drastically effect assembly?
Assembly
updated 3.4 years ago by ★ 27k • written 3.4 years ago by ▴ 80
0
votes
1
reply
1.7k
views
Comment: C: Do you NEED to bin a metagenome into MAGs?
3.4 years ago by robert.murphy ▴ 80
181 results • Page 2 of 4
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