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2
votes
1
reply
1000
views
extracting cell specific reads from cellranger BAM output file
bam cellranger seurat
updated 15 months ago by 45k • written 15 months ago by ▴ 10
0
votes
0
replies
499
views
Allele specific expression of imprinted gens from 10x scRNA-seq data
scrna-seq imprinted 10x genes
18 months ago by singcell ▴ 10
13
votes
13
replies
24k
views
6 follow
Cluster sub-set analysis using Seurat
seurat single-cell
updated 23 months ago by ▴ 30 • written 5.3 years ago by ▴ 10
0
votes
2
replies
1.3k
views
Normalizing Salmon output count data matrix using DESeq2
tximport counts Salmon DESeq2
updated 2.9 years ago by 89k • written 2.9 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Comment: Comment: Number of cells in each clusters
3.2 years ago by singcell ▴ 10
2
votes
3
replies
1.8k
views
Number of cells in each clusters
numbers Seurat cell
updated 3.2 years ago by ★ 19k • written 3.2 years ago by ▴ 10
1
vote
1
reply
897
views
Removing contamination of set of genes from selected cell clusters
contamination scrna-seq seurat cell
updated 3.3 years ago by 89k • written 3.3 years ago by ▴ 10
1
vote
1
reply
1.1k
views
which version "EnsDb.Rnorvegicus.v79" assembly correspond to rn5 or rn6?
reference single-cell signac genome
updated 3.7 years ago by 89k • written 3.7 years ago by ▴ 10
0
votes
0
replies
872
views
Gene expression values each samples (replicates) using `AverageExpression` function
SEURAT SINGLE-CELL averageexpression
4.7 years ago by singcell ▴ 10
0
votes
1
reply
5.1k
views
Comment: C: How do I change size of gene names displayed on plotHeatmap from scater R Packag
5.2 years ago by singcell ▴ 10
0
votes
1
reply
939
views
Is it possible to determine if cells are clustered by samples and not by cell types?
single-cell RNA-Seq Seurat Sample variation
updated 5.3 years ago by 20 • written 5.4 years ago by ▴ 10
0
votes
1
reply
24k
views
Comment: C: Cluster sub-set analysis using Seurat
5.3 years ago by singcell ▴ 10
0
votes
0
replies
4.6k
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
5.3 years ago by singcell ▴ 10
0
votes
0
replies
4.6k
views
Answer: A: Deterimining overall number of differentially expressed genes between WT and KO
5.3 years ago by singcell ▴ 10
4
votes
9
replies
4.6k
views
Deterimining overall number of differentially expressed genes between WT and KO samples
Seurat scRNA-Seq DEG Findmarkers
5.3 years ago by singcell ▴ 10
0
votes
0
replies
4.6k
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
5.3 years ago by singcell ▴ 10
0
votes
0
replies
4.6k
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
5.3 years ago by singcell ▴ 10
0
votes
0
replies
11k
views
Comment: C: EdgeR for single cell differential expression analysis
5.3 years ago by singcell ▴ 10
1
vote
0
replies
884
views
Calculating in SEURAT, list of highly dysregulated genes across conditions in a particular cluster.
rna-seq seurat Stimulated vs Control PBMCs
5.5 years ago by singcell ▴ 10
0
votes
1
reply
3.7k
views
Comment: C: Calculating differential expression genes between two sample sequenced using 10x
5.8 years ago by singcell ▴ 10
3
votes
3
replies
3.7k
views
Calculating differential expression genes between two sample sequenced using 10x
RNA-Seq sequencing
updated 5.8 years ago by ★ 4.2k • written 5.8 years ago by ▴ 10
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