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10
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13
replies
14k
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6 follow
Cluster sub-set analysis using Seurat
seurat single-cell
updated 4 months ago by ▴ 20 • written 3.8 years ago by • 0
0
votes
2
replies
790
views
Normalizing Salmon output count data matrix using DESeq2
tximport counts Salmon DESeq2
updated 16 months ago by 82k • written 16 months ago by • 0
0
votes
1
reply
1.0k
views
Comment: Comment: Number of cells in each clusters
20 months ago by singcell • 0
1
vote
3
replies
1.0k
views
Number of cells in each clusters
numbers Seurat cell
updated 19 months ago by ★ 16k • written 20 months ago by • 0
1
vote
1
reply
538
views
Removing contamination of set of genes from selected cell clusters
contamination scrna-seq seurat cell
updated 21 months ago by 82k • written 21 months ago by • 0
1
vote
1
reply
681
views
which version "EnsDb.Rnorvegicus.v79" assembly correspond to rn5 or rn6?
reference single-cell signac genome
updated 2.2 years ago by 82k • written 2.2 years ago by • 0
0
votes
0
replies
653
views
Gene expression values each samples (replicates) using `AverageExpression` function
SEURAT SINGLE-CELL averageexpression
3.2 years ago by singcell • 0
0
votes
1
reply
4.0k
views
Comment: C: How do I change size of gene names displayed on plotHeatmap from scater R Packag
3.7 years ago by singcell • 0
0
votes
1
reply
686
views
Is it possible to determine if cells are clustered by samples and not by cell types?
single-cell RNA-Seq Seurat Sample variation
updated 3.8 years ago by 20 • written 3.8 years ago by • 0
0
votes
1
reply
14k
views
Comment: C: Cluster sub-set analysis using Seurat
3.8 years ago by singcell • 0
0
votes
0
replies
3.3k
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
3.8 years ago by singcell • 0
0
votes
0
replies
3.3k
views
Answer: A: Deterimining overall number of differentially expressed genes between WT and KO
3.8 years ago by singcell • 0
4
votes
9
replies
3.3k
views
Deterimining overall number of differentially expressed genes between WT and KO samples
Seurat scRNA-Seq DEG Findmarkers
3.8 years ago by singcell • 0
0
votes
0
replies
3.3k
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
3.8 years ago by singcell • 0
0
votes
0
replies
3.3k
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
3.8 years ago by singcell • 0
0
votes
0
replies
9.0k
views
Comment: C: EdgeR for single cell differential expression analysis
3.8 years ago by singcell • 0
1
vote
0
replies
696
views
Calculating in SEURAT, list of highly dysregulated genes across conditions in a particular cluster.
rna-seq seurat Stimulated vs Control PBMCs
4.0 years ago by singcell • 0
0
votes
1
reply
3.0k
views
Comment: C: Calculating differential expression genes between two sample sequenced using 10x
4.3 years ago by singcell • 0
3
votes
3
replies
3.0k
views
Calculating differential expression genes between two sample sequenced using 10x
RNA-Seq sequencing
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by • 0
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