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743
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SECAPR issue
SECAPR reads trimmomatic pipeline alignement
4.5 years ago by Begonia_pavonina ▴ 210
3
votes
8
replies
3.2k
views
blast2gff IndexError: list index out of range
blast2gff GFF BLAST Python blastn
updated 4.1 years ago by • 0 • written 5.1 years ago by ▴ 210
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0
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4.5k
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Comment: C: merging overlaping ranges with GenomicRanges
5.0 years ago by Begonia_pavonina ▴ 210
0
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0
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4.5k
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Comment: C: merging overlaping ranges with GenomicRanges
5.0 years ago by Begonia_pavonina ▴ 210
5
votes
7
replies
1.8k
views
Replace FASTA file headers
fasta FASTA sed loop
updated 5.0 years ago by 22k • written 5.0 years ago by ▴ 210
0
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0
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2.4k
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Comment: C: Keep metadata gc column using GenomicRanges
5.0 years ago by Begonia_pavonina ▴ 210
0
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1
reply
1.8k
views
Comment: C: Replace FASTA file headers
5.0 years ago by Begonia_pavonina ▴ 210
2
votes
2
replies
2.4k
views
Keep metadata gc column using GenomicRanges
ranges Iranges R
5.0 years ago by Begonia_pavonina ▴ 210
6
votes
4
replies
4.5k
views
merging overlaping ranges with GenomicRanges
R blast GenomicRanges range
updated 5.0 years ago by 23k • written 5.0 years ago by ▴ 210
0
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0
replies
958
views
Answer: A: How to build my resource-bundle for variant recalibrator?
5.0 years ago by Begonia_pavonina ▴ 210
3
votes
1
reply
2.6k
views
Length of scaffolds in a FASTA file
fasta genome bash scaffold
updated 5.1 years ago by 21k • written 5.1 years ago by ▴ 210
0
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0
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2.0k
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Comment: C: edit FASTA file according to range positions
5.1 years ago by Begonia_pavonina ▴ 210
0
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0
replies
2.0k
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Comment: C: edit FASTA file according to range positions
5.1 years ago by Begonia_pavonina ▴ 210
0
votes
1
reply
2.0k
views
Comment: A: edit FASTA file according to range positions
5.1 years ago by Begonia_pavonina ▴ 210
3
votes
7
replies
2.0k
views
edit FASTA file according to range positions
alignment fasta bed samtools
5.1 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
883
views
Comment: C: A piece of advice on subsetting genomes
5.1 years ago by Begonia_pavonina ▴ 210
0
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1
reply
883
views
A piece of advice on subsetting genomes
gff fasta genome annotations blast
5.1 years ago by Begonia_pavonina ▴ 210
0
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0
replies
3.2k
views
Comment: C: blast2gff IndexError: list index out of range
5.1 years ago by Begonia_pavonina ▴ 210
0
votes
1
reply
3.2k
views
Comment: C: blast2gff IndexError: list index out of range
5.1 years ago by Begonia_pavonina ▴ 210
0
votes
1
reply
3.2k
views
Comment: A: blast2gff IndexError: list index out of range
5.1 years ago by Begonia_pavonina ▴ 210
0
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0
replies
2.6k
views
Comment: C: How to compare VCF files called from different reference genomes?
5.1 years ago by Begonia_pavonina ▴ 210
0
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0
replies
4.9k
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Comment: C: Variant Quality Score Recalibration (Vqsr) For Non-Human Genomes
5.1 years ago by Begonia_pavonina ▴ 210
7
votes
2
replies
9.6k
views
GATK 3.8 and GATK 3.7 scripts
gatk alignment version repository
updated 5.2 years ago by ▴ 10 • written 5.4 years ago by ▴ 210
0
votes
0
replies
807
views
Clustering of SNPs toward same QUAL values
snp freebayes variants quality
updated 5.2 years ago by 20 • written 5.2 years ago by ▴ 210
0
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1
reply
2.6k
views
Comment: A: How to compare VCF files called from different reference genomes?
5.2 years ago by Begonia_pavonina ▴ 210
1
vote
4
replies
2.6k
views
How to compare VCF files called from different reference genomes?
vcf Freebayes Picard SNP alignment
5.2 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
1.9k
views
Comment: C: Comparing VCFs constructed from mapping to different reference genomes
5.2 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
23k
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Comment: C: Filters/Quality For Vcf Generated By Freebayes
5.2 years ago by Begonia_pavonina ▴ 210
0
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1
reply
23k
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Comment: C: Filters/Quality For Vcf Generated By Freebayes
5.2 years ago by Begonia_pavonina ▴ 210
1
vote
4
replies
2.8k
views
Average depth/coverage before and after PCR duplicates cleanup
markduplicates samtools meandepth BAM
updated 5.4 years ago by 20 • written 5.5 years ago by ▴ 210
0
votes
0
replies
810
views
Blast2gff index issue
gff blastn blast2gff index
5.4 years ago by Begonia_pavonina ▴ 210
0
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0
replies
2.8k
views
Comment: C: Average depth/coverage before and after PCR duplicates cleanup
5.5 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
2.8k
views
Comment: A: Average depth/coverage before and after PCR duplicates cleanup
5.5 years ago by Begonia_pavonina ▴ 210
0
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0
replies
11k
views
Comment: C: bcftools consensus command
5.7 years ago by Begonia_pavonina ▴ 210
0
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1
reply
11k
views
Comment: C: bcftools consensus command
5.7 years ago by Begonia_pavonina ▴ 210
0
votes
1
reply
11k
views
Comment: C: bcftools consensus command
updated 5.7 years ago by 154k • written 5.7 years ago by ▴ 210
0
votes
1
reply
11k
views
Comment: C: bcftools consensus command
5.7 years ago by Begonia_pavonina ▴ 210
4
votes
9
replies
11k
views
bcftools consensus command
vcf bcftools
updated 2.5 years ago by 45k • written 5.7 years ago by ▴ 210
1
vote
1
reply
5.0k
views
Comment: C: bcftools isec -n operators
5.7 years ago by Begonia_pavonina ▴ 210
2
votes
1
reply
5.0k
views
Comment: Comment: bcftools isec -n operators
5.7 years ago by Begonia_pavonina ▴ 210
13
votes
6
replies
5.0k
views
bcftools isec -n operators
bcftools intersect
updated 4.1 years ago by 45k • written 5.7 years ago by ▴ 210
141 results • Page 3 of 3
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