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Comment: Comment: How to generate a bam file with reads of only a certain length?
3.5 years ago by Medhat 9.8k
1
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1.4k
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Comment: Comment: How to generate a bam file with reads of only a certain length?
3.5 years ago by Medhat 9.8k
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1.4k
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Comment: Comment: how to visulize structure variants
3.5 years ago by Medhat 9.8k
2
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1
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1.4k
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Answer: Answer: how to visulize structure variants
3.5 years ago by Medhat 9.8k
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5.3k
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Using PRINSEQ lite with zipped paired-end illumina reads
prinseq next-gen-sequencing quality-reads Illumina
updated 3.6 years ago by • 0 • written 11.2 years ago by 9.8k
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1.5k
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Comment: Comment: liftOver input file
3.7 years ago by Medhat 9.8k
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2.4k
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Comment: Comment: How to extract reads that support the structural variants using the vcf file and
3.8 years ago by Medhat 9.8k
76
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14
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19k
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15 follow
Tutorial: List Of Bioinformatics Books
books
updated 2.7 years ago by 45k • written 12.5 years ago by 9.8k
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2.4k
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Comment: Comment: Select variants that exist in all samples from a merged VCF file using bcftools
3.8 years ago by Medhat 9.8k
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1
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2.4k
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Comment: Comment: Select variants that exist in all samples from a merged VCF file using bcftools
3.8 years ago by Medhat 9.8k
1
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4
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2.4k
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Select variants that exist in all samples from a merged VCF file using bcftools
SNVs bcftools
3.8 years ago by Medhat 9.8k
0
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1
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1.2k
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Comment: Comment: Tool that finds direct DNA repeats with mismatches
4.2 years ago by Medhat 9.8k
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0
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1.8k
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Comment: Comment: Pipeline version control system, pipeline storage
4.2 years ago by Medhat 9.8k
2
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3
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3.9k
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error while using plant ensembl biomart
software error gene ensembl biomart
updated 4.2 years ago by • 0 • written 8.0 years ago by 9.8k
0
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0
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977
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Answer: Answer: Retrieve reads overlapping indels
4.3 years ago by Medhat 9.8k
20
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12
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41k
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7 follow
Forum: When To Use Sed Awk Over Perl Or Python
perl python awk
updated 2.7 years ago by 45k • written 11.9 years ago by 9.8k
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3.2k
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Comment: Comment: install R package
4.4 years ago by Medhat 9.8k
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2.2k
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Comment: Comment: error on extracting a snp from vcf file using bcftools
4.4 years ago by Medhat 9.8k
0
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1
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2.2k
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Comment: Comment: error on extracting a snp from vcf file using bcftools
4.4 years ago by Medhat 9.8k
0
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2.2k
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Answer: Answer: error on extracting a snp from vcf file using bcftools
4.4 years ago by Medhat 9.8k
0
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0
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948
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Job: Postdoctoral Associate , Baylor College of Medicine, Human Genome Sequencing Center, Houston, United States
TGS NGS
updated 4.4 years ago by 45k • written 4.4 years ago by 9.8k
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1.4k
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Comment: Comment: Bioinformatician
4.5 years ago by Medhat 9.8k
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1
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3.0k
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Comment: Comment: HISAT2 Genome indexing
4.5 years ago by Medhat 9.8k
2
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1
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2.2k
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Samtools reheader Numerical result out of range
samtools header bam
4.5 years ago by Medhat 9.8k
2
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0
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2.2k
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Answer: Answer: Samtools reheader Numerical result out of range
4.5 years ago by Medhat 9.8k
0
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0
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1.5k
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Comment: Comment: Why we have exons that start and end at the same coordinate?!
4.6 years ago by Medhat 9.8k
2
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2
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1.5k
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Why we have exons that start and end at the same coordinate?!
gtf exon GRCh38
updated 4.6 years ago by 48k • written 4.6 years ago by 9.8k
0
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0
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2.2k
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Comment: Comment: Gene Labels (ggplot2)
4.6 years ago by Medhat 9.8k
1
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1
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2.3k
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Answer: Comment: Select one variant from multiple in ALT in VCF file
4.6 years ago by Medhat 9.8k
0
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1
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1.4k
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Comment: C: how to use unix tools to convert VCF genotypes like '1|1' to this '2'
4.7 years ago by Medhat 9.8k
0
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1.2k
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Comment: C: Structural variations intersection
4.7 years ago by Medhat 9.8k
1
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1
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3.9k
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Comment: C: Problem using PicardTools MarkDuplicates: SortingCollection: There is not enough
4.7 years ago by Medhat 9.8k
0
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1
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2.0k
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Comment: C: Extracting the Best sequence per genomic region in a genome based on the Best e-
4.7 years ago by Medhat 9.8k
2
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0
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2.0k
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Answer: C: Extracting the Best sequence per genomic region in a genome based on the Best e-
4.7 years ago by Medhat 9.8k
0
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0
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1.7k
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Comment: C: fastqc report and quality check
4.7 years ago by Medhat 9.8k
1
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0
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3.4k
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Comment: C: Pacific Bio Long Reads vs Illumina Short Reads
4.7 years ago by Medhat 9.8k
2
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0
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3.4k
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Comment: C: Pacific Bio Long Reads vs Illumina Short Reads
4.7 years ago by Medhat 9.8k
0
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0
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5.0k
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Comment: C: Mappability file for hg38
4.8 years ago by Medhat 9.8k
5
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2
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5.0k
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Mappability file for hg38
sequence mappabilit
4.8 years ago by Medhat 9.8k
1
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2
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4.2k
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What do you use to generates summary statistics of sequence and quality data for PacBio?
genome sequence Assembly pacbio next-gen
updated 3.9 years ago by 45k • written 11.3 years ago by 9.8k
0
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0
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2.3k
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Comment: C: how to change header of fasta file
5.1 years ago by Medhat 9.8k
0
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0
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5.4k
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Comment: C: Kraken2 Error in buildind NCBI bacterial database
5.1 years ago by Medhat 9.8k
1
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2
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5.4k
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Answer: C: Kraken2 Error in buildind NCBI bacterial database
5.1 years ago by Medhat 9.8k
2
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1
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5.3k
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Answer: A: bcftools error duplicate samples
5.1 years ago by Medhat 9.8k
0
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0
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6.0k
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Comment: C: Things you wish you knew when entering the bioinformatics field
5.1 years ago by Medhat 9.8k
2
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1
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6.0k
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Comment: C: Things you wish you knew when entering the bioinformatics field
5.1 years ago by Medhat 9.8k
1
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0
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1.2k
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Job: PostDoc position at Human Genome Sequencing Center @ Baylor College of Medicine, Houston, TX, USA
postdoc metagenomics
updated 2.4 years ago by 45k • written 5.1 years ago by 9.8k
4
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0
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5.4k
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Comment: C: Converting MAF to Fasta
5.2 years ago by Medhat 9.8k
0
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10
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4.8k
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Tools for metagenomics classification using long reads
metagenomics sequen alignment
updated 5.2 years ago by ▴ 30 • written 7.6 years ago by 9.8k
0
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0
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2.0k
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Comment: C: Understanding VCF : 0/0 v 0/1 v 1/0 v 1/1 etc
5.2 years ago by Medhat 9.8k
1,014 results • Page 2 of 21
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