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comments
0
votes
0
replies
331
views
Is it reasonable to do "Gene Regulatory Network Inference" for each cell type and do differential GRN
GRN
scRNA-seq
2.2 years ago by
shangguandong1996
▴ 30
14
votes
9
replies
2.6k
views
what's the disadvantage of removing cell-cylcle gene compared with regressing out
scRNA-seq
updated 10 months ago by
e.r.zakiev
▴ 230 • written 2.3 years ago by
shangguandong1996
▴ 30
0
votes
1
reply
530
views
multiple Sequence Alignment tools for cis-element
MSA
cis-element
updated 2.5 years ago by
lieven.sterck
15k • written 2.5 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
1.1k
views
Comment:
Comment: how to link hmmalign result and FastTree or other Tree tools
2.5 years ago by
shangguandong1996
▴ 30
0
votes
1
reply
1.1k
views
Comment:
Comment: how to link hmmalign result and FastTree or other Tree tools
2.5 years ago by
shangguandong1996
▴ 30
1
vote
4
replies
1.1k
views
how to link hmmalign result and FastTree or other Tree tools
FastTree
hmmalign
Phylogenetic_tree
2.5 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
491
views
How can I build archetypal consensus motifs to represent different cluster motifs
motif
3.0 years ago by
shangguandong1996
▴ 30
5
votes
3
replies
1.9k
views
Is there any software that can use ATAC-seq to identify super enhancer
ATAC-seq
enhancer
super
updated 3.2 years ago by
jared.andrews07
★ 18k • written 3.2 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
566
views
What's the biology meaning of multi-peak in a region
peak
ATAC
3.3 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
4.7k
views
Comment:
Comment: weird MAplot or volcano plot of DESeq2 diff result
3.3 years ago by
shangguandong1996
▴ 30
5
votes
12
replies
4.7k
views
weird MAplot or volcano plot of DESeq2 diff result
RNA-seq
DESeq2
3.3 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
4.7k
views
Comment:
Comment: weird MAplot or volcano plot of DESeq2 diff result
3.3 years ago by
shangguandong1996
▴ 30
0
votes
1
reply
4.7k
views
Comment:
Comment: weird MAplot or volcano plot of DESeq2 diff result
3.3 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
1.3k
views
Comment:
Comment: Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
3.5 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
1.3k
views
Comment:
Comment: Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
3.5 years ago by
shangguandong1996
▴ 30
2
votes
5
replies
1.3k
views
Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
ATAC
updated 3.5 years ago by
Lila M
★ 1.3k • written 3.5 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
1.1k
views
how to combined peak score or other quantitative indicator when identify TF target gene
ChIP-Seq
3.6 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
1.5k
views
Comment:
Comment: how to extract REF and ALT DNA string around SNV
3.6 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
1.5k
views
Comment:
Comment: how to extract REF and ALT DNA string around SNV
3.6 years ago by
shangguandong1996
▴ 30
3
votes
4
replies
1.5k
views
how to extract REF and ALT DNA string around SNV
SNV
motif
3.6 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
2.1k
views
Comment:
C: Is there other IDE like R studio working on the linux?
3.8 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
2.1k
views
Answer:
A: Is there other IDE like R studio working on the linux?
3.8 years ago by
shangguandong1996
▴ 30
12
votes
15
replies
2.1k
views
6 follow
Is there other IDE like R studio working on the linux?
bioconductor
Rstudio
R
updated 20 months ago by
Ram
44k • written 3.8 years ago by
shangguandong1996
▴ 30
0
votes
1
reply
628
views
how to make BBmerge produce same strand fastq file
BBmerge
3.8 years ago by
shangguandong1996
▴ 30
0
votes
1
reply
2.1k
views
Comment:
C: Is there other IDE like R studio working on the linux?
3.8 years ago by
shangguandong1996
▴ 30
0
votes
1
reply
2.1k
views
Comment:
C: Is there other IDE like R studio working on the linux?
3.8 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
2.1k
views
Comment:
C: Is there other IDE like R studio working on the linux?
3.8 years ago by
shangguandong1996
▴ 30
2
votes
2
replies
3.0k
views
Should I use Z-score standardization or Min-Max scaling in biological data ?
scale
heatmap
3.9 years ago by
shangguandong1996
▴ 30
2
votes
1
reply
1.1k
views
how to compare two gene lfc rank is similar or opposite ?
RNA-Seq
updated 3.9 years ago by
thyleal
▴ 160 • written 3.9 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
5.9k
views
Comment:
C: problem with HOMER findMotifsGenome.pl
4.6 years ago by
shangguandong1996
▴ 30
0
votes
0
replies
16k
views
Comment:
C: Converting from BED to SAF/GFF
4.8 years ago by
shangguandong1996
▴ 30
0
votes
2
replies
16k
views
Comment:
C: Converting from BED to SAF/GFF
4.8 years ago by
shangguandong1996
▴ 30
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