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Is it reasonable to do "Gene Regulatory Network Inference" for each cell type and do differential GRN
GRN scRNA-seq
18 months ago by shangguandong1996 ▴ 30
13
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9
replies
1.5k
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what's the disadvantage of removing cell-cylcle gene compared with regressing out
scRNA-seq
updated 10 weeks ago by ▴ 190 • written 20 months ago by ▴ 30
0
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1
reply
435
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multiple Sequence Alignment tools for cis-element
MSA cis-element
updated 22 months ago by 15k • written 22 months ago by ▴ 30
0
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0
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873
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Comment: Comment: how to link hmmalign result and FastTree or other Tree tools
22 months ago by shangguandong1996 ▴ 30
0
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1
reply
873
views
Comment: Comment: how to link hmmalign result and FastTree or other Tree tools
22 months ago by shangguandong1996 ▴ 30
1
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4
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873
views
how to link hmmalign result and FastTree or other Tree tools
FastTree hmmalign Phylogenetic_tree
22 months ago by shangguandong1996 ▴ 30
0
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0
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414
views
How can I build archetypal consensus motifs to represent different cluster motifs
motif
2.3 years ago by shangguandong1996 ▴ 30
5
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3
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1.5k
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Is there any software that can use ATAC-seq to identify super enhancer
ATAC-seq enhancer super
updated 2.6 years ago by ★ 16k • written 2.6 years ago by ▴ 30
0
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0
replies
485
views
What's the biology meaning of multi-peak in a region
peak ATAC
2.7 years ago by shangguandong1996 ▴ 30
0
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0
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4.1k
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Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
2.7 years ago by shangguandong1996 ▴ 30
5
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12
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4.1k
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weird MAplot or volcano plot of DESeq2 diff result
RNA-seq DESeq2
2.7 years ago by shangguandong1996 ▴ 30
0
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0
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4.1k
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Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
2.7 years ago by shangguandong1996 ▴ 30
0
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1
reply
4.1k
views
Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
2.7 years ago by shangguandong1996 ▴ 30
0
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0
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1.1k
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Comment: Comment: Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
2.8 years ago by shangguandong1996 ▴ 30
0
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0
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1.1k
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Comment: Comment: Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
2.8 years ago by shangguandong1996 ▴ 30
2
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5
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1.1k
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Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
ATAC
updated 2.8 years ago by ★ 1.2k • written 2.8 years ago by ▴ 30
0
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0
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1.0k
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how to combined peak score or other quantitative indicator when identify TF target gene
ChIP-Seq
3.0 years ago by shangguandong1996 ▴ 30
0
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0
replies
1.3k
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Comment: Comment: how to extract REF and ALT DNA string around SNV
3.0 years ago by shangguandong1996 ▴ 30
0
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0
replies
1.3k
views
Comment: Comment: how to extract REF and ALT DNA string around SNV
3.0 years ago by shangguandong1996 ▴ 30
3
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4
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1.3k
views
how to extract REF and ALT DNA string around SNV
SNV motif
3.0 years ago by shangguandong1996 ▴ 30
0
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0
replies
1.7k
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Comment: C: Is there other IDE like R studio working on the linux?
3.1 years ago by shangguandong1996 ▴ 30
0
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0
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1.7k
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Answer: A: Is there other IDE like R studio working on the linux?
3.1 years ago by shangguandong1996 ▴ 30
12
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15
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1.7k
views
6 follow
Is there other IDE like R studio working on the linux?
bioconductor Rstudio R
updated 13 months ago by 43k • written 3.2 years ago by ▴ 30
0
votes
1
reply
553
views
how to make BBmerge produce same strand fastq file
BBmerge
3.1 years ago by shangguandong1996 ▴ 30
0
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1
reply
1.7k
views
Comment: C: Is there other IDE like R studio working on the linux?
3.2 years ago by shangguandong1996 ▴ 30
0
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1
reply
1.7k
views
Comment: C: Is there other IDE like R studio working on the linux?
3.2 years ago by shangguandong1996 ▴ 30
0
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0
replies
1.7k
views
Comment: C: Is there other IDE like R studio working on the linux?
3.2 years ago by shangguandong1996 ▴ 30
2
votes
2
replies
2.7k
views
Should I use Z-score standardization or Min-Max scaling in biological data ?
scale heatmap
3.2 years ago by shangguandong1996 ▴ 30
2
votes
1
reply
949
views
how to compare two gene lfc rank is similar or opposite ?
RNA-Seq
updated 3.3 years ago by ▴ 160 • written 3.3 years ago by ▴ 30
0
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0
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5.1k
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Comment: C: problem with HOMER findMotifsGenome.pl
3.9 years ago by shangguandong1996 ▴ 30
0
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0
replies
15k
views
Comment: C: Converting from BED to SAF/GFF
4.1 years ago by shangguandong1996 ▴ 30
0
votes
2
replies
15k
views
Comment: C: Converting from BED to SAF/GFF
4.1 years ago by shangguandong1996 ▴ 30
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