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Is it reasonable to do "Gene Regulatory Network Inference" for each cell type and do differential GRN
GRN scRNA-seq
2.1 years ago by shangguandong1996 ▴ 30
13
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9
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2.4k
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what's the disadvantage of removing cell-cylcle gene compared with regressing out
scRNA-seq
updated 9 months ago by ▴ 230 • written 2.3 years ago by ▴ 30
0
votes
1
reply
521
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multiple Sequence Alignment tools for cis-element
MSA cis-element
updated 2.4 years ago by 15k • written 2.4 years ago by ▴ 30
0
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0
replies
1.1k
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Comment: Comment: how to link hmmalign result and FastTree or other Tree tools
2.5 years ago by shangguandong1996 ▴ 30
0
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1
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1.1k
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Comment: Comment: how to link hmmalign result and FastTree or other Tree tools
2.5 years ago by shangguandong1996 ▴ 30
1
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4
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1.1k
views
how to link hmmalign result and FastTree or other Tree tools
FastTree hmmalign Phylogenetic_tree
2.5 years ago by shangguandong1996 ▴ 30
0
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0
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481
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How can I build archetypal consensus motifs to represent different cluster motifs
motif
2.9 years ago by shangguandong1996 ▴ 30
5
votes
3
replies
1.9k
views
Is there any software that can use ATAC-seq to identify super enhancer
ATAC-seq enhancer super
updated 3.1 years ago by ★ 18k • written 3.1 years ago by ▴ 30
0
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0
replies
557
views
What's the biology meaning of multi-peak in a region
peak ATAC
3.2 years ago by shangguandong1996 ▴ 30
0
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0
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4.7k
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Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
3.2 years ago by shangguandong1996 ▴ 30
5
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12
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4.7k
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weird MAplot or volcano plot of DESeq2 diff result
RNA-seq DESeq2
3.2 years ago by shangguandong1996 ▴ 30
0
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0
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4.7k
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Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
3.2 years ago by shangguandong1996 ▴ 30
0
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1
reply
4.7k
views
Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
3.2 years ago by shangguandong1996 ▴ 30
0
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0
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1.3k
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Comment: Comment: Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
3.4 years ago by shangguandong1996 ▴ 30
0
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0
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1.3k
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Comment: Comment: Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
3.4 years ago by shangguandong1996 ▴ 30
2
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5
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1.3k
views
Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
ATAC
updated 3.4 years ago by ★ 1.3k • written 3.4 years ago by ▴ 30
0
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0
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1.1k
views
how to combined peak score or other quantitative indicator when identify TF target gene
ChIP-Seq
3.6 years ago by shangguandong1996 ▴ 30
0
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0
replies
1.5k
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Comment: Comment: how to extract REF and ALT DNA string around SNV
3.6 years ago by shangguandong1996 ▴ 30
0
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0
replies
1.5k
views
Comment: Comment: how to extract REF and ALT DNA string around SNV
3.6 years ago by shangguandong1996 ▴ 30
3
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4
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1.5k
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how to extract REF and ALT DNA string around SNV
SNV motif
3.6 years ago by shangguandong1996 ▴ 30
0
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0
replies
2.0k
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Comment: C: Is there other IDE like R studio working on the linux?
3.7 years ago by shangguandong1996 ▴ 30
0
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0
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2.0k
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Answer: A: Is there other IDE like R studio working on the linux?
3.7 years ago by shangguandong1996 ▴ 30
12
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15
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2.0k
views
6 follow
Is there other IDE like R studio working on the linux?
bioconductor Rstudio R
updated 20 months ago by 44k • written 3.8 years ago by ▴ 30
0
votes
1
reply
619
views
how to make BBmerge produce same strand fastq file
BBmerge
3.7 years ago by shangguandong1996 ▴ 30
0
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1
reply
2.0k
views
Comment: C: Is there other IDE like R studio working on the linux?
3.8 years ago by shangguandong1996 ▴ 30
0
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1
reply
2.0k
views
Comment: C: Is there other IDE like R studio working on the linux?
3.8 years ago by shangguandong1996 ▴ 30
0
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0
replies
2.0k
views
Comment: C: Is there other IDE like R studio working on the linux?
3.8 years ago by shangguandong1996 ▴ 30
2
votes
2
replies
3.0k
views
Should I use Z-score standardization or Min-Max scaling in biological data ?
scale heatmap
3.8 years ago by shangguandong1996 ▴ 30
2
votes
1
reply
1.1k
views
how to compare two gene lfc rank is similar or opposite ?
RNA-Seq
updated 3.9 years ago by ▴ 160 • written 3.9 years ago by ▴ 30
0
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0
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5.8k
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Comment: C: problem with HOMER findMotifsGenome.pl
4.5 years ago by shangguandong1996 ▴ 30
0
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0
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16k
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Comment: C: Converting from BED to SAF/GFF
4.7 years ago by shangguandong1996 ▴ 30
0
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2
replies
16k
views
Comment: C: Converting from BED to SAF/GFF
4.7 years ago by shangguandong1996 ▴ 30
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