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11
votes
9
replies
4.4k
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8 follow
Why it is not use UMIs for RNA-seq?
RNA-Seq UMIs scRNA-seq
updated 15 months ago by ▴ 30 • written 4.9 years ago by ★ 1.3k
3
votes
0
replies
565
views
Comparing ATAC-seq narrowPeak Files from Chicken and Mouse
liftOver ATAC-seq csaw
updated 16 months ago by 45k • written 16 months ago by ★ 1.3k
0
votes
0
replies
2.2k
views
Comment: Comment: RNA Contamination Tool for Developing Cell Samples
21 months ago by Rafael Soler ★ 1.3k
0
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1
reply
2.2k
views
Comment: Comment: RNA Contamination Tool for Developing Cell Samples
21 months ago by Rafael Soler ★ 1.3k
9
votes
8
replies
2.2k
views
RNA Contamination Tool for Developing Cell Samples
scRNA contamination SoupX
updated 21 months ago by 45k • written 22 months ago by ★ 1.3k
0
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1
reply
2.2k
views
Comment: Comment: RNA Contamination Tool for Developing Cell Samples
21 months ago by Rafael Soler ★ 1.3k
1
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0
replies
2.2k
views
Comment: Comment: RNA Contamination Tool for Developing Cell Samples
22 months ago by Rafael Soler ★ 1.3k
0
votes
0
replies
3.3k
views
Comment: Comment: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
2.0 years ago by Rafael Soler ★ 1.3k
15
votes
6
replies
3.3k
views
Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
genome bed transcript TSS
2.0 years ago by Rafael Soler ★ 1.3k
0
votes
0
replies
3.3k
views
Answer: Answer: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
2.1 years ago by Rafael Soler ★ 1.3k
1
vote
1
reply
3.3k
views
Comment: Comment: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
2.4 years ago by Rafael Soler ★ 1.3k
0
votes
0
replies
5.7k
views
Comment: Comment: How to perform synteny alignments and plots only with a gene?
2.5 years ago by Rafael Soler ★ 1.3k
1
vote
1
reply
5.7k
views
Comment: Comment: How to perform synteny alignments and plots only with a gene?
2.5 years ago by Rafael Soler ★ 1.3k
0
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1
reply
5.7k
views
Comment: Comment: How to perform synteny alignments and plots only with a gene?
2.5 years ago by Rafael Soler ★ 1.3k
13
votes
8
replies
5.7k
views
How to perform synteny alignments and plots only with a gene?
Comparative Evolution Alignment Synteny Genomics
2.5 years ago by Rafael Soler ★ 1.3k
3
votes
0
replies
679
views
miRNA-seq count by "ID" or "Alias" using mirBase mmu.gff3
HTSeq miRNA mirBase
2.9 years ago by Rafael Soler ★ 1.3k
3
votes
0
replies
2.1k
views
Answer: Answer: SCTransform in single cell
3.1 years ago by Rafael Soler ★ 1.3k
5
votes
0
replies
920
views
Answer: Answer: rna sample QC report (eukaryotic )
3.1 years ago by Rafael Soler ★ 1.3k
1
vote
0
replies
2.3k
views
Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
3.1 years ago by Rafael Soler ★ 1.3k
3
votes
0
replies
2.3k
views
Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
3.1 years ago by Rafael Soler ★ 1.3k
3
votes
1
reply
2.3k
views
Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
3.1 years ago by Rafael Soler ★ 1.3k
1
vote
1
reply
2.3k
views
Comment: Comment: How to calculate if statistically a variable of a bulk RNA-seq affects the compa
3.1 years ago by Rafael Soler ★ 1.3k
18
votes
7
replies
2.3k
views
How to calculate if statistically a variable of a bulk RNA-seq affects the comparison of interest?
DESeq2 Variable RNA-seq
3.1 years ago by Rafael Soler ★ 1.3k
0
votes
0
replies
1.8k
views
Comment: Comment: 5' and 3' UTRs in RNA regulation
3.1 years ago by Rafael Soler ★ 1.3k
1
vote
0
replies
1.6k
views
Answer: Answer: Good morning
3.1 years ago by Rafael Soler ★ 1.3k
5
votes
1
reply
1.8k
views
Answer: Answer: 5' and 3' UTRs in RNA regulation
3.1 years ago by Rafael Soler ★ 1.3k
5
votes
0
replies
1.1k
views
Answer: Answer: What does it mean enriched gene sets at nominal p-value <1%? GSEA
3.1 years ago by Rafael Soler ★ 1.3k
3
votes
0
replies
1.6k
views
Answer: Answer: Identifying tumor vs normal cells in scRNAseq samples
3.1 years ago by Rafael Soler ★ 1.3k
0
votes
1
reply
2.0k
views
Comment: Comment: How DESeq2 formula correction works?
3.1 years ago by Rafael Soler ★ 1.3k
1
vote
0
replies
2.0k
views
Comment: Comment: How DESeq2 formula correction works?
3.1 years ago by Rafael Soler ★ 1.3k
3
votes
1
reply
1.6k
views
Comment: Comment: GSEA report, What does it mean gene sets are upregulated?
3.1 years ago by Rafael Soler ★ 1.3k
2
votes
1
reply
2.0k
views
Comment: Comment: How DESeq2 formula correction works?
3.1 years ago by Rafael Soler ★ 1.3k
12
votes
7
replies
2.0k
views
How DESeq2 formula correction works?
GLM DESeq2 Batch-effect
updated 15 months ago by 45k • written 3.1 years ago by ★ 1.3k
4
votes
1
reply
1.6k
views
Answer: Answer: GSEA report, What does it mean gene sets are upregulated?
3.1 years ago by Rafael Soler ★ 1.3k
3
votes
0
replies
4.1k
views
Comment: Comment: Analyzing single cell RNA seq with multiple samples and conditions
3.1 years ago by Rafael Soler ★ 1.3k
5
votes
1
reply
4.1k
views
Answer: Answer: Analyzing single cell RNA seq with multiple samples and conditions
3.1 years ago by Rafael Soler ★ 1.3k
1
vote
1
reply
1.7k
views
Comment: Comment: Export list of full length DNA gene sequences
3.2 years ago by Rafael Soler ★ 1.3k
2
votes
1
reply
1.7k
views
Answer: Answer: Export list of full length DNA gene sequences
3.2 years ago by Rafael Soler ★ 1.3k
0
votes
0
replies
1.0k
views
Answer: Answer: ESTIMATION OF LEVEL OF CYTOKINES FROM BULK RNAseq
3.3 years ago by Rafael Soler ★ 1.3k
1
vote
0
replies
1.7k
views
Comment: Comment: Multiple exposure timelines (time-points) in one DESeq2 object or multiple DESeq
3.3 years ago by Rafael Soler ★ 1.3k
0
votes
0
replies
940
views
Answer: Answer: gene library composition
3.3 years ago by Rafael Soler ★ 1.3k
1
vote
1
reply
1.7k
views
Answer: Answer: Multiple exposure timelines (time-points) in one DESeq2 object or multiple DESeq
updated 3.3 years ago by 89k • written 3.3 years ago by ★ 1.3k
0
votes
0
replies
1.5k
views
Comment: Comment: What's the full list of UniProt topological domain types?
3.3 years ago by Rafael Soler ★ 1.3k
0
votes
0
replies
4.4k
views
Comment: Comment: How to add color gradient guide to my FeaturePlot?
3.3 years ago by Rafael Soler ★ 1.3k
5
votes
1
reply
4.4k
views
Answer: Answer: How to add color gradient guide to my FeaturePlot?
3.3 years ago by Rafael Soler ★ 1.3k
9
votes
7
replies
1.7k
views
How to subtract or sum 12 depending on the last and following line using awk?
grep Awk bash
updated 3.4 years ago by 5.1k • written 3.4 years ago by ★ 1.3k
0
votes
0
replies
1.7k
views
Comment: Comment: How to substact or sum 12 depeding on the last and following line using awk?
3.4 years ago by Rafael Soler ★ 1.3k
3
votes
2
replies
5.5k
views
Answer: Answer: make a BED file with exons only
3.5 years ago by Rafael Soler ★ 1.3k
0
votes
0
replies
3.6k
views
Comment: Comment: Pool or not to pool
3.5 years ago by Rafael Soler ★ 1.3k
0
votes
1
reply
3.6k
views
Comment: Comment: Pool or not to pool
3.5 years ago by Rafael Soler ★ 1.3k
97 results • Page 1 of 2
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