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2.1k
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Answer: Answer: Extract UMIs using UMI-tools
3 months ago by Ömer An ▴ 260
7
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5
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5.4k
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How to access GeneCards via XML?
GeneCards XML
updated 14 months ago by ★ 9.3k • written 8.8 years ago by ▴ 260
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0
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41k
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Comment: Comment: How to extract sample id using bcftools or vcftools
20 months ago by Ömer An ▴ 260
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0
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18k
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Comment: C: Batch correction in DESeq2
2.3 years ago by Ömer An ▴ 260
1
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1
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87k
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Comment: C: How to plot coverage and depth statistics of a bam file
2.6 years ago by Ömer An ▴ 260
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0
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3.8k
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Comment: C: CellRanger Make Counts Expected Cells
2.6 years ago by Ömer An ▴ 260
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0
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11k
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Comment: C: correcting for a batch in DESeq2
2.7 years ago by Ömer An ▴ 260
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0
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8.9k
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Comment: C: STAR or Bowtie for small RNA seq?
2.9 years ago by Ömer An ▴ 260
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1
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4.1k
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Comment: C: best STAR options for miRNA mapping?
2.9 years ago by Ömer An ▴ 260
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0
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4.3k
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Comment: C: Cellranger count fails at mapping
2.9 years ago by Ömer An ▴ 260
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1
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3.5k
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Answer: A: software of single-cell RNA-seq from fastq or fasta
2.9 years ago by Ömer An ▴ 260
1
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1
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11k
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Comment: C: How to download mm10 GTF file with the gene id and gene name using UCSC table br
3.1 years ago by Ömer An ▴ 260
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1
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3.2k
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Comment: A: How to analyze the RNAseq paired samples with DESeq2?
3.2 years ago by Ömer An ▴ 260
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0
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7.4k
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Answer: A: input for rMATS
3.2 years ago by Ömer An ▴ 260
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0
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6.9k
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Answer: A: How to merge multiple single cell sequencing data after processing by CellRanger
3.2 years ago by Ömer An ▴ 260
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0
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43k
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Answer: A: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
3.2 years ago by Ömer An ▴ 260
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0
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953
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Answer: A: RNAfold with batch constraints
3.4 years ago by Ömer An ▴ 260
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0
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9.8k
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Answer: A: How to install gdc-client in Ubnutu
3.4 years ago by Ömer An ▴ 260
0
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0
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995
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Comment: C: Find 12-mer not mapping to the human genome
3.4 years ago by Ömer An ▴ 260
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0
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7.4k
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Comment: C: input for rMATS
3.8 years ago by Ömer An ▴ 260
0
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0
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7.4k
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Comment: C: input for rMATS
3.8 years ago by Ömer An ▴ 260
0
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1
reply
7.4k
views
Comment: C: input for rMATS
3.8 years ago by Ömer An ▴ 260
0
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0
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8.8k
views
Comment: C: How many genes to include for a GSEA analysis
3.8 years ago by Ömer An ▴ 260
0
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1
reply
2.7k
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Comment: C: DESeq2: unable to allocate memory error
4.0 years ago by Ömer An ▴ 260
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0
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4.4k
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Answer: A: TCGA BRCA sample_type blood derived normal?
4.1 years ago by Ömer An ▴ 260
1
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0
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4.2k
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Comment: C: Getting error in running rMATS
4.3 years ago by Ömer An ▴ 260
5
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1
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41k
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Answer: A: how to extract sample id with bcftools or vcftools
updated 4.3 years ago by 11k • written 5.0 years ago by ▴ 260
0
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0
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7.9k
views
Comment: Comment: Splicing factor database
updated 6 months ago by 38k • written 4.5 years ago by ▴ 260
1
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1
reply
2.1k
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circRNA-Seq analysis tools
circRNA-Seq circrna
updated 4.6 years ago by ▴ 760 • written 4.6 years ago by ▴ 260
2
votes
3
replies
995
views
Find 12-mer not mapping to the human genome
mapping alignment sequencing sequence
updated 4.6 years ago by 11k • written 4.6 years ago by ▴ 260
1
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0
replies
53k
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Comment: C: VCF files: Change Chromosome Notation
4.6 years ago by Ömer An ▴ 260
1
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2
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56k
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Comment: C: How To Convert Gencode Gtf Into Bed Format ?
4.9 years ago by Ömer An ▴ 260
1
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0
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2.5k
views
Answer: A: Training dataset for NGS HLA typing (reads >200bp from PCR amplicons)
5.0 years ago by Ömer An ▴ 260
1
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0
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16k
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Answer: A: Software For Hla Typing Using Ngs?
5.0 years ago by Ömer An ▴ 260
0
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0
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21k
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Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
5.1 years ago by Ömer An ▴ 260
0
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0
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4.3k
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Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
5.2 years ago by Ömer An ▴ 260
0
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1
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4.3k
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Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
5.2 years ago by Ömer An ▴ 260
0
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0
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49k
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Comment: C: How To Download All Sra Samples At Once ?
5.6 years ago by Ömer An ▴ 260
0
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0
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28k
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Comment: C: Extract Sequence From Fasta File Using Ids From A Separate File
5.9 years ago by Ömer An ▴ 260
2
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1
reply
3.9k
views
Homozygous/Heterozygous Deletions (Copy Number Variation) in TCGA
cnv TCGA
updated 6.0 years ago by • 0 • written 8.9 years ago by ▴ 260
0
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0
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14k
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Comment: C: FastQ quality check : what can we correct ?
6.3 years ago by Ömer An ▴ 260
0
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0
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9.2k
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Comment: C: Paired End Trimmomatic producing asymmetric paired read files.
6.6 years ago by Ömer An ▴ 260
1
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0
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84k
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
6.8 years ago by Ömer An ▴ 260
1
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0
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1.8k
views
How to get strand-specific nucleotide change annotation in ANNOVAR?
ANNOVAR
7.0 years ago by Ömer An ▴ 260
0
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1
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3.2k
views
Comment: C: How to identify non-expressed genes in microarray?
7.5 years ago by Ömer An ▴ 260
2
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3
replies
3.2k
views
How to identify non-expressed genes in microarray?
microarray gene expression
updated 7.5 years ago by ▴ 770 • written 7.5 years ago by ▴ 260
0
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1
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1.8k
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Comment: C: Is there a repository for data on shRNA screening studies?
7.5 years ago by Ömer An ▴ 260
0
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0
replies
1.4k
views
Functional Redundancy of Proteins
functional redundancy sequence identity domain
7.5 years ago by Ömer An ▴ 260
3
votes
3
replies
1.8k
views
Is there a repository for data on shRNA screening studies?
shRNA
updated 4 months ago by 38k • written 7.7 years ago by ▴ 260
0
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0
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8.7k
views
Comment: Comment: What Happened To The Bind (Biological Interaction Network) Database And Is Acces
updated 3 months ago by 38k • written 7.8 years ago by ▴ 260
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