Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
0
replies
2.5k
views
Comment: Comment: counting number of CpGs that are methylated and unmethylated in a read of whole
6 weeks ago by Ömer An ▴ 260
0
votes
0
replies
2.4k
views
Comment: Comment: fusion detection for DNA Sequencing data
8 weeks ago by Ömer An ▴ 260
0
votes
0
replies
1.6k
views
Comment: Comment: cnvkit Error message "length of weights should be the same as the number of prob
10 weeks ago by Ömer An ▴ 260
0
votes
0
replies
9.9k
views
Answer: Answer: What Is The Meaning Of Snp Strand
5 months ago by Ömer An ▴ 260
0
votes
0
replies
16k
views
Answer: Answer: How to download dbSNP153 vcf files in hg19/GRCH37 version
5 months ago by Ömer An ▴ 260
0
votes
0
replies
14k
views
Comment: Comment: MAF vs VAF
7 months ago by Ömer An ▴ 260
0
votes
0
replies
41k
views
Answer: Answer: Converting a VCF with SNPs and indels to BED format
19 months ago by Ömer An ▴ 260
1
vote
1
reply
6.6k
views
Answer: Answer: Extract UMIs using UMI-tools
23 months ago by Ömer An ▴ 260
7
votes
5
replies
7.1k
views
6 follow
How to access GeneCards via XML?
GeneCards XML
updated 2.8 years ago by ★ 9.5k • written 10.5 years ago by ▴ 260
0
votes
0
replies
56k
views
Comment: Comment: How to extract sample id using bcftools or vcftools
3.3 years ago by Ömer An ▴ 260
0
votes
0
replies
33k
views
Comment: C: Batch correction in DESeq2
3.9 years ago by Ömer An ▴ 260
1
vote
1
reply
109k
views
Comment: C: How to plot coverage and depth statistics of a bam file
4.2 years ago by Ömer An ▴ 260
0
votes
0
replies
5.5k
views
Comment: C: CellRanger Make Counts Expected Cells
4.2 years ago by Ömer An ▴ 260
0
votes
0
replies
12k
views
Comment: C: correcting for a batch in DESeq2
4.3 years ago by Ömer An ▴ 260
0
votes
0
replies
12k
views
Comment: C: STAR or Bowtie for small RNA seq?
4.5 years ago by Ömer An ▴ 260
0
votes
1
reply
5.0k
views
Comment: C: best STAR options for miRNA mapping?
4.5 years ago by Ömer An ▴ 260
1
vote
0
replies
5.7k
views
Comment: C: Cellranger count fails at mapping
4.5 years ago by Ömer An ▴ 260
0
votes
1
reply
6.2k
views
Answer: A: software of single-cell RNA-seq from fastq or fasta
4.5 years ago by Ömer An ▴ 260
1
vote
1
reply
14k
views
Comment: C: How to download mm10 GTF file with the gene id and gene name using UCSC table br
4.7 years ago by Ömer An ▴ 260
0
votes
1
reply
5.1k
views
Comment: A: How to analyze the RNAseq paired samples with DESeq2?
4.8 years ago by Ömer An ▴ 260
0
votes
0
replies
9.7k
views
Answer: A: input for rMATS
4.9 years ago by Ömer An ▴ 260
0
votes
0
replies
8.7k
views
Answer: A: How to merge multiple single cell sequencing data after processing by CellRanger
4.9 years ago by Ömer An ▴ 260
0
votes
0
replies
53k
views
Answer: A: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
4.9 years ago by Ömer An ▴ 260
0
votes
0
replies
1.3k
views
Answer: A: RNAfold with batch constraints
5.0 years ago by Ömer An ▴ 260
0
votes
0
replies
14k
views
Answer: A: How to install gdc-client in Ubnutu
5.0 years ago by Ömer An ▴ 260
0
votes
0
replies
1.4k
views
Comment: C: Find 12-mer not mapping to the human genome
5.1 years ago by Ömer An ▴ 260
0
votes
0
replies
9.7k
views
Comment: C: input for rMATS
5.4 years ago by Ömer An ▴ 260
0
votes
0
replies
9.7k
views
Comment: C: input for rMATS
5.4 years ago by Ömer An ▴ 260
0
votes
1
reply
9.7k
views
Comment: C: input for rMATS
5.4 years ago by Ömer An ▴ 260
0
votes
0
replies
14k
views
Comment: C: How many genes to include for a GSEA analysis
5.5 years ago by Ömer An ▴ 260
0
votes
1
reply
3.5k
views
Comment: C: DESeq2: unable to allocate memory error
5.6 years ago by Ömer An ▴ 260
0
votes
0
replies
4.9k
views
Answer: A: TCGA BRCA sample_type blood derived normal?
5.7 years ago by Ömer An ▴ 260
1
vote
0
replies
5.1k
views
Comment: C: Getting error in running rMATS
5.9 years ago by Ömer An ▴ 260
5
votes
1
reply
56k
views
Answer: A: how to extract sample id with bcftools or vcftools
updated 6.0 years ago by 12k • written 6.7 years ago by ▴ 260
0
votes
0
replies
9.1k
views
Comment: Comment: Splicing factor database
updated 2.2 years ago by 44k • written 6.2 years ago by ▴ 260
1
vote
1
reply
2.6k
views
circRNA-Seq analysis tools
circRNA-Seq circrna
updated 6.2 years ago by ▴ 770 • written 6.2 years ago by ▴ 260
2
votes
3
replies
1.4k
views
Find 12-mer not mapping to the human genome
mapping alignment sequencing sequence
updated 6.2 years ago by 11k • written 6.2 years ago by ▴ 260
1
vote
0
replies
72k
views
Comment: C: VCF files: Change Chromosome Notation
6.2 years ago by Ömer An ▴ 260
1
vote
2
replies
67k
views
Comment: C: How To Convert Gencode Gtf Into Bed Format ?
6.6 years ago by Ömer An ▴ 260
1
vote
0
replies
2.8k
views
Answer: A: Training dataset for NGS HLA typing (reads >200bp from PCR amplicons)
6.7 years ago by Ömer An ▴ 260
1
vote
0
replies
19k
views
Answer: A: Software For Hla Typing Using Ngs?
6.7 years ago by Ömer An ▴ 260
0
votes
0
replies
24k
views
Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
6.7 years ago by Ömer An ▴ 260
0
votes
0
replies
5.1k
views
Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
6.8 years ago by Ömer An ▴ 260
0
votes
1
reply
5.1k
views
Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
6.9 years ago by Ömer An ▴ 260
0
votes
0
replies
56k
views
Comment: C: How To Download All Sra Samples At Once ?
7.2 years ago by Ömer An ▴ 260
0
votes
0
replies
30k
views
Comment: C: Extract Sequence From Fasta File Using Ids From A Separate File
7.5 years ago by Ömer An ▴ 260
2
votes
1
reply
4.3k
views
Homozygous/Heterozygous Deletions (Copy Number Variation) in TCGA
cnv TCGA
updated 7.7 years ago by • 0 • written 10.5 years ago by ▴ 260
0
votes
0
replies
15k
views
Comment: C: FastQ quality check : what can we correct ?
7.9 years ago by Ömer An ▴ 260
0
votes
0
replies
11k
views
Comment: C: Paired End Trimmomatic producing asymmetric paired read files.
8.2 years ago by Ömer An ▴ 260
1
vote
0
replies
101k
views
Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
8.5 years ago by Ömer An ▴ 260
68 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6