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Answer: Answer: Converting a VCF with SNPs and indels to BED format
8 months ago by Ömer An ▴ 260
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4.2k
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Answer: Answer: Extract UMIs using UMI-tools
12 months ago by Ömer An ▴ 260
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5
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6.1k
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6 follow
How to access GeneCards via XML?
GeneCards XML
updated 22 months ago by ★ 9.3k • written 9.5 years ago by ▴ 260
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48k
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Comment: Comment: How to extract sample id using bcftools or vcftools
2.4 years ago by Ömer An ▴ 260
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25k
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Comment: C: Batch correction in DESeq2
3.0 years ago by Ömer An ▴ 260
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1
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97k
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Comment: C: How to plot coverage and depth statistics of a bam file
3.3 years ago by Ömer An ▴ 260
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4.6k
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Comment: C: CellRanger Make Counts Expected Cells
3.3 years ago by Ömer An ▴ 260
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11k
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Comment: C: correcting for a batch in DESeq2
3.4 years ago by Ömer An ▴ 260
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10k
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Comment: C: STAR or Bowtie for small RNA seq?
3.6 years ago by Ömer An ▴ 260
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1
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4.5k
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Comment: C: best STAR options for miRNA mapping?
3.6 years ago by Ömer An ▴ 260
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5.0k
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Comment: C: Cellranger count fails at mapping
3.6 years ago by Ömer An ▴ 260
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1
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4.7k
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Answer: A: software of single-cell RNA-seq from fastq or fasta
3.6 years ago by Ömer An ▴ 260
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1
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12k
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Comment: C: How to download mm10 GTF file with the gene id and gene name using UCSC table br
3.8 years ago by Ömer An ▴ 260
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1
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4.1k
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Comment: A: How to analyze the RNAseq paired samples with DESeq2?
3.9 years ago by Ömer An ▴ 260
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8.4k
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Answer: A: input for rMATS
4.0 years ago by Ömer An ▴ 260
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7.7k
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Answer: A: How to merge multiple single cell sequencing data after processing by CellRanger
4.0 years ago by Ömer An ▴ 260
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47k
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Answer: A: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
4.0 years ago by Ömer An ▴ 260
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1.1k
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Answer: A: RNAfold with batch constraints
4.1 years ago by Ömer An ▴ 260
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0
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12k
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Answer: A: How to install gdc-client in Ubnutu
4.1 years ago by Ömer An ▴ 260
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1.2k
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Comment: C: Find 12-mer not mapping to the human genome
4.2 years ago by Ömer An ▴ 260
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8.4k
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Comment: C: input for rMATS
4.5 years ago by Ömer An ▴ 260
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0
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8.4k
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Comment: C: input for rMATS
4.5 years ago by Ömer An ▴ 260
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1
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8.4k
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Comment: C: input for rMATS
4.5 years ago by Ömer An ▴ 260
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0
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10k
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Comment: C: How many genes to include for a GSEA analysis
4.5 years ago by Ömer An ▴ 260
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1
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3.1k
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Comment: C: DESeq2: unable to allocate memory error
4.7 years ago by Ömer An ▴ 260
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4.6k
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Answer: A: TCGA BRCA sample_type blood derived normal?
4.8 years ago by Ömer An ▴ 260
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0
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4.6k
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Comment: C: Getting error in running rMATS
5.0 years ago by Ömer An ▴ 260
5
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1
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48k
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Answer: A: how to extract sample id with bcftools or vcftools
updated 5.0 years ago by 11k • written 5.8 years ago by ▴ 260
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0
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8.4k
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Comment: Comment: Splicing factor database
updated 15 months ago by 41k • written 5.3 years ago by ▴ 260
1
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1
reply
2.3k
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circRNA-Seq analysis tools
circRNA-Seq circrna
updated 5.3 years ago by ▴ 760 • written 5.3 years ago by ▴ 260
2
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3
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1.2k
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Find 12-mer not mapping to the human genome
mapping alignment sequencing sequence
updated 5.3 years ago by 11k • written 5.3 years ago by ▴ 260
1
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0
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62k
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Comment: C: VCF files: Change Chromosome Notation
5.3 years ago by Ömer An ▴ 260
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2
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62k
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Comment: C: How To Convert Gencode Gtf Into Bed Format ?
5.6 years ago by Ömer An ▴ 260
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2.6k
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Answer: A: Training dataset for NGS HLA typing (reads >200bp from PCR amplicons)
5.8 years ago by Ömer An ▴ 260
1
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0
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18k
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Answer: A: Software For Hla Typing Using Ngs?
5.8 years ago by Ömer An ▴ 260
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0
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22k
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Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
5.8 years ago by Ömer An ▴ 260
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0
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4.6k
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Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
5.9 years ago by Ömer An ▴ 260
0
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1
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4.6k
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Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
5.9 years ago by Ömer An ▴ 260
0
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0
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53k
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Comment: C: How To Download All Sra Samples At Once ?
6.3 years ago by Ömer An ▴ 260
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0
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29k
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Comment: C: Extract Sequence From Fasta File Using Ids From A Separate File
6.6 years ago by Ömer An ▴ 260
2
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1
reply
4.1k
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Homozygous/Heterozygous Deletions (Copy Number Variation) in TCGA
cnv TCGA
updated 6.8 years ago by • 0 • written 9.6 years ago by ▴ 260
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0
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15k
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Comment: C: FastQ quality check : what can we correct ?
7.0 years ago by Ömer An ▴ 260
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0
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9.9k
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Comment: C: Paired End Trimmomatic producing asymmetric paired read files.
7.3 years ago by Ömer An ▴ 260
1
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0
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90k
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
7.6 years ago by Ömer An ▴ 260
1
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0
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1.9k
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How to get strand-specific nucleotide change annotation in ANNOVAR?
ANNOVAR
7.7 years ago by Ömer An ▴ 260
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1
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3.4k
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Comment: C: How to identify non-expressed genes in microarray?
8.2 years ago by Ömer An ▴ 260
2
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3
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3.4k
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How to identify non-expressed genes in microarray?
microarray gene expression
updated 8.2 years ago by ▴ 780 • written 8.2 years ago by ▴ 260
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1
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1.9k
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Comment: C: Is there a repository for data on shRNA screening studies?
8.2 years ago by Ömer An ▴ 260
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0
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1.5k
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Functional Redundancy of Proteins
functional redundancy sequence identity domain
8.2 years ago by Ömer An ▴ 260
3
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3
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1.9k
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Is there a repository for data on shRNA screening studies?
shRNA
updated 12 months ago by 41k • written 8.4 years ago by ▴ 260
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