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questions
0
votes
0
replies
336
views
ClusterProfiler GO / KEGG enrichment analysis for non Model organism
KEGG
RNA-SEQ
enrichemnt
3 months ago by
Pegasus
▴ 130
5
votes
6
replies
955
views
What is the best backgrowun gene list to choose for GSEA, ORA, and for KOBAS
RNA-SEQ
4 months ago by
Pegasus
▴ 130
2
votes
1
reply
359
views
ROAST
RNA-SEQ
updated 5 months ago by
GenoMax
150k • written 6 months ago by
Pegasus
▴ 130
0
votes
0
replies
265
views
Quorum sensing genes in Bacteria
RNA-SEQ
6 months ago by
Pegasus
▴ 130
6
votes
10
replies
1.3k
views
Low mapping rate using SALMON
RNA-SEQ
updated 7 months ago by
GenoMax
150k • written 7 months ago by
Pegasus
▴ 130
3
votes
4
replies
1.3k
views
GSEA vs GO-enrichemnt analysis
RNA-SEQ
7 months ago by
Pegasus
▴ 130
2
votes
4
replies
915
views
Functional enrichment analysis for unique gene IDs
RNA-SEQ
9 months ago by
Pegasus
▴ 130
1
vote
1
reply
418
views
The total expressed genes in RNA-Seq data
RNA-SEQ
updated 10 months ago by
ATpoint
87k • written 10 months ago by
Pegasus
▴ 130
0
votes
2
replies
779
views
Alternative tool or website of PathogenFinder
WGS
bacteria
updated 12 months ago by
GenoMax
150k • written 13 months ago by
Pegasus
▴ 130
2
votes
3
replies
937
views
Contigs number vs NNN gap % in WGS
WGS
updated 13 months ago by
GenoMax
150k • written 13 months ago by
Pegasus
▴ 130
6
votes
7
replies
1.3k
views
Finding EntreZ IDs for refseq IDs
RNA-SEQ
13 months ago by
Pegasus
▴ 130
1
vote
2
replies
988
views
Converting RefSeq protein accession IDs into entreZ IDs
RNA-SEQ
22 months ago by
Pegasus
▴ 130
2
votes
6
replies
1.1k
views
Find data-based Gene_IDs for unknown gene_IDs in gtf.file
RNA-SEQ
annotation
GO-term
22 months ago by
Pegasus
▴ 130
2
votes
2
replies
1.0k
views
Gene Ontology / Hypothetical proteins
RNA-SEQ
terms
GO
23 months ago by
Pegasus
▴ 130
1
vote
5
replies
1.8k
views
GFF/GTF file error / featureCounts
RNA-SEQ
updated 23 months ago by
barslmn
★ 2.4k • written 23 months ago by
Pegasus
▴ 130
0
votes
0
replies
507
views
Link products to their genes
RNA-SEQ
GO
edgeR
24 months ago by
Pegasus
▴ 130
1
vote
3
replies
1.2k
views
How to extract/find the actual names of the gene_IDs if they are not fully presented in gtf.file, and link them to the Count.matrix
featureCounts
gtf
RNA-Seq
updated 2.0 years ago by
GenoMax
150k • written 2.0 years ago by
Pegasus
▴ 130
2
votes
4
replies
1.4k
views
FeatureCounts >edgeR > GO
RNA-SEQ
24 months ago by
Pegasus
▴ 130
1
vote
2
replies
1.1k
views
RNA-seq data analysis (prokaryotes) featurecounts with
featureCounts
RNA-Seq
2.0 years ago by
Pegasus
▴ 130
5
votes
6
replies
1.6k
views
Trimmomatic generated two (reverse-forward) paired-files with different number of reads
Trimmomatic
RNA-Seq
2.0 years ago by
Pegasus
▴ 130
4
votes
3
replies
1.4k
views
R removes 1st column (gene-id) from featureCounts count.txt table
featureCounts
RNA-Seq
R
2.0 years ago by
Pegasus
▴ 130
4
votes
9
replies
2.7k
views
PROKKA.gff file is not compatible with featureCounts
featureCounts
RNA-seq
2.1 years ago by
Pegasus
▴ 130
0
votes
0
replies
602
views
why count_matrix.csv generated by "prepDE.py3" showed unidentified IDs
Stringtie
RNA-seq
2.1 years ago by
Pegasus
▴ 130
2
votes
11
replies
5.8k
views
bedGraph to bigwig
IGV
RNA-seq
updated 2.1 years ago by
Ram
45k • written 2.2 years ago by
Pegasus
▴ 130
1
vote
4
replies
2.6k
views
Stringtie issue. "Error: no valid ID found for GFF record"
Stringtie
RNA-seq
updated 2.2 years ago by
GenoMax
150k • written 2.2 years ago by
Pegasus
▴ 130
2
votes
2
replies
1.0k
views
Hisat2
Hisat2
RNA-seq
2.2 years ago by
Pegasus
▴ 130
5
votes
2
replies
943
views
HISAT2_linux
RNA-SEQ
2.4 years ago by
Pegasus
▴ 130
0
votes
0
replies
464
views
biosynthesis gene clusters comparison
comparison
genome
2.6 years ago by
Pegasus
▴ 130
5
votes
6
replies
4.7k
views
Trimmomatic/ linux system
Illumina
sequencing
RNA-Seq
Trimmomatic
updated 2.2 years ago by
GenoMax
150k • written 3.0 years ago by
Pegasus
▴ 130
1
vote
5
replies
3.1k
views
NCBI PGAP yami file
genome
updated 2.5 years ago by
ahmer
• 0 • written 4.7 years ago by
Pegasus
▴ 130
0
votes
0
replies
548
views
vecscreen results of bacterial scaffolds
genome
4.7 years ago by
Pegasus
▴ 130
2
votes
5
replies
1.3k
views
Missing pseudogenes in annotation report
Assembly
4.7 years ago by
Pegasus
▴ 130
3
votes
5
replies
1.2k
views
NCBI Contamination Screen
next-gen
genome
4.7 years ago by
Pegasus
▴ 130
6
votes
10
replies
1.4k
views
QC prior to bacterial genome assembly
sequencing
genome
next-gen
4.7 years ago by
Pegasus
▴ 130
16
votes
16
replies
6.8k
views
how to run a tool (package) installed into anaconda environment ..using mac terminal
genome
updated 21 months ago by
Ram
45k • written 4.8 years ago by
Pegasus
▴ 130
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