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what is the best way to build my design model with DESeq2
design-model
DESeq2
single-cell
updated 4 months ago by
LauferVA
4.2k • written 4 months ago by
paria
▴ 90
0
votes
0
replies
415
views
Why in Heatmap plot my case and control samples of single cell dataset are not well clustered?
DESeq2
single-cell
Heatmap
updated 10 months ago by
Ram
43k • written 10 months ago by
paria
▴ 90
0
votes
0
replies
412
views
Why DEG analysis of the same region in two different datasets results in different sets of DEGs?
single
integration
cell
DEG
design
analysis
13 months ago by
paria
▴ 90
3
votes
4
replies
1.1k
views
Why my single cell cluster is splitted?
clustering
single-cell
updated 13 months ago by
Mensur Dlakic
★ 27k • written 13 months ago by
paria
▴ 90
0
votes
2
replies
571
views
If using singeR return more clusters than available ones should I do reclustering?
singleR
updated 14 months ago by
jared.andrews07
★ 16k • written 14 months ago by
paria
▴ 90
2
votes
2
replies
733
views
Should I necessarily use cluster evaluation tools for my single cell dataset?
single-cell
cluster-evaluation
scclusteval
14 months ago by
paria
▴ 90
0
votes
0
replies
546
views
integration using rPCA with reference or without it?
integration
Seurat
rPCA
Single-cell
14 months ago by
paria
▴ 90
2
votes
4
replies
1.5k
views
How to convert Seurat object to sce object retaining the HVG
HVG
single-cell
SingleCellExperiment
seurat
updated 8 months ago by
Hamid Ghaedi
3.2k • written 14 months ago by
paria
▴ 90
1
vote
1
reply
969
views
singleR annotation shows overlapping clusters
single
cluster
cell
annotation
singleR
Seurat
updated 14 months ago by
jared.andrews07
★ 16k • written 14 months ago by
paria
▴ 90
3
votes
3
replies
1.9k
views
What should I do if the gene IDs in my reference dataset and test dataset are different
gene-ID
RNA-seq
R
singleR
15 months ago by
paria
▴ 90
0
votes
2
replies
2.1k
views
How to make a Dotplot like this in R for my clustered single cell data set
data
single
DotPlot
cell
18 months ago by
paria
▴ 90
1
vote
5
replies
1.6k
views
How do I know if I'm overcorrecting my single cell data
Rpca
sn-RNA
overcorrection
seq
seurat
CCA
updated 17 months ago by
jared.andrews07
★ 16k • written 18 months ago by
paria
▴ 90
2
votes
2
replies
2.3k
views
How should I solve the error: comparison (3) is possible only for atomic and list types
single
ScaleData
cell
rpca
analysis
updated 18 months ago by
GenoMax
142k • written 18 months ago by
paria
▴ 90
0
votes
2
replies
553
views
Does chemistry have significant effects on my single nucleus dataset?
single-nucleus
chemistry
dataset
18 months ago by
paria
▴ 90
1
vote
4
replies
1.1k
views
Single cell cluster evaluation does not output reasonable number of stable clusters
RNA
scclusteval
single-cell
integration
harmony
sequencing
14 months ago by
paria
▴ 90
0
votes
3
replies
1.4k
views
How do I know the SNPS which are removed when clumping are in a LD block or SNPs not existed in 1000 Genome
Randomization
data
clumping
Mendelian
GWAS
updated 2.5 years ago by
Kevin Blighe
87k • written 2.5 years ago by
paria
▴ 90
1
vote
3
replies
823
views
How to process batches to be able to correct for its effect
batch-correction
sample-randomization
updated 2.7 years ago by
rpolicastro
13k • written 2.7 years ago by
paria
▴ 90
0
votes
0
replies
522
views
Do I need to include the "ins:me:alu" line for my MR analysis
Randomization
Mendelian
data
stat
GWAS
Summary
2.8 years ago by
paria
▴ 90
0
votes
0
replies
654
views
How to update rsid given chromosome number, chr position, a1 and a2
SNP
ID
2.9 years ago by
paria
▴ 90
0
votes
3
replies
1.1k
views
Cell composition in each condition of single cell data
cell
composition
single-cell
scProportionTest
3.0 years ago by
paria
▴ 90
6
votes
9
replies
5.1k
views
regressing out covariate from Seurat integrated data
single-cell
seurat
updated 2.3 years ago by
botloggy
▴ 10 • written 3.2 years ago by
paria
▴ 90
0
votes
0
replies
665
views
Integration or not?
single-cell RNA sequencing
seurat
integration
3.2 years ago by
paria
▴ 90
4
votes
8
replies
1.9k
views
Unused argument in R
R
3.2 years ago by
paria
▴ 90
2
votes
7
replies
2.9k
views
How to regress out variants using SCTransform function?
Single-nuclei RNA sequencing
SCTransform
Seurat
3.2 years ago by
paria
▴ 90
0
votes
0
replies
623
views
single-nuclei 10X genomics sequencing metrics
RNA-Seq
sequence
3.4 years ago by
paria
▴ 90
0
votes
0
replies
808
views
Integration of 10X genomics single-nuclei RNA seq datasets
RNA-Seq
R
sequencing
updated 3.5 years ago by
Biostar
20 • written 3.7 years ago by
paria
▴ 90
7
votes
2
replies
3.6k
views
single-nuclei 10X genomics
RNA-Seq
R
updated 3.7 years ago by
jared.andrews07
★ 16k • written 3.7 years ago by
paria
▴ 90
27 results • Page
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