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0
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531
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SeqSQC can be used for sample QC of Whole Genome Sequencing Data
SeqSQC WGS
2.1 years ago by ttom ▴ 230
3
votes
3
replies
4.5k
views
How to choose LiftOver chain file
hg38tohg19 picard LiftOver
updated 2.1 years ago by ▴ 630 • written 2.1 years ago by ▴ 230
0
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1
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2.0k
views
Comment: Comment: bcftoold guess ploidy
2.2 years ago by ttom ▴ 230
1
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3
replies
2.0k
views
bcftoold guess ploidy
bcftools guess-ploidy
updated 2.2 years ago by ★ 3.1k • written 2.3 years ago by ▴ 230
0
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1
reply
1.6k
views
Annovar Error
annovar
2.4 years ago by ttom ▴ 230
0
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1
reply
1.2k
views
SnpEff output VCF in `.gz` format
snpeff
updated 2.4 years ago by 166k • written 2.4 years ago by ▴ 230
0
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1
reply
1.6k
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Comment: Comment: Snpeff run with downloaded genome database
2.4 years ago by ttom ▴ 230
1
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2
replies
1.6k
views
Snpeff run with downloaded genome database
snpeff
updated 2.4 years ago by ▴ 10 • written 2.4 years ago by ▴ 230
1
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0
replies
1.6k
views
Comment: Comment: GATK CombineGVCFs with genotypes './.'
3.4 years ago by ttom ▴ 230
1
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4
replies
1.6k
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GATK CombineGVCFs with genotypes './.'
GATK CombineGVCFs
3.4 years ago by ttom ▴ 230
0
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1
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1.6k
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Comment: Comment: GATK CombineGVCFs with genotypes './.'
3.4 years ago by ttom ▴ 230
0
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0
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2.5k
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Comment: Comment: How to subset a GVCF using GATK SelectVariants
3.4 years ago by ttom ▴ 230
1
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3
replies
2.5k
views
How to subset a GVCF using GATK SelectVariants
GATK SelectVariants
3.4 years ago by ttom ▴ 230
1
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0
replies
8.9k
views
Answer: A: GATK-Depth of Coverage - Issue with per gene coverage
updated 5.9 years ago by 45k • written 11.6 years ago by ▴ 230
0
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1
reply
16k
views
Comment: C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 6.1 years ago by 45k • written 12.1 years ago by ▴ 230
0
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1
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16k
views
Comment: C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 6.1 years ago by 45k • written 12.1 years ago by ▴ 230
1
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1
reply
16k
views
Comment: C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 6.1 years ago by 45k • written 12.1 years ago by ▴ 230
0
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0
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3.3k
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Comment: C: Capture Output files using glob
7.3 years ago by ttom ▴ 230
0
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1
reply
3.3k
views
Comment: C: Capture Output files using glob
7.4 years ago by ttom ▴ 230
3
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0
replies
2.6k
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Answer: A: Workflow Error - "list indices must be integers, not str"
7.4 years ago by ttom ▴ 230
3
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3
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2.6k
views
Workflow Error - "list indices must be integers, not str"
CWL
7.4 years ago by ttom ▴ 230
0
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0
replies
2.6k
views
Comment: C: Workflow Error - "list indices must be integers, not str"
7.4 years ago by ttom ▴ 230
0
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0
replies
5.7k
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Comment: C: CWL passing secondary files in a workflow
7.4 years ago by ttom ▴ 230
0
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1
reply
5.7k
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Comment: C: CWL passing secondary files in a workflow
7.4 years ago by ttom ▴ 230
1
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0
replies
3.0k
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Comment: C: Input type array and Output type file, possible in CWL ?
7.4 years ago by ttom ▴ 230
3
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2
replies
3.0k
views
Input type array and Output type file, possible in CWL ?
CWL
7.4 years ago by ttom ▴ 230
0
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1
reply
5.7k
views
Comment: C: CWL passing secondary files in a workflow
7.4 years ago by ttom ▴ 230
3
votes
6
replies
5.7k
views
CWL passing secondary files in a workflow
CWL
updated 7.4 years ago by ▴ 170 • written 7.4 years ago by ▴ 230
0
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1
reply
3.3k
views
Comment: C: Capture Output files using glob
7.4 years ago by ttom ▴ 230
0
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0
replies
3.0k
views
Comment: C: String editing for output file name
7.4 years ago by ttom ▴ 230
6
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9
replies
3.0k
views
String editing for output file name
CWL
7.4 years ago by ttom ▴ 230
1
vote
1
reply
3.0k
views
Answer: A: String editing for output file name
7.4 years ago by ttom ▴ 230
0
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1
reply
3.3k
views
Comment: C: Capture Output files using glob
7.4 years ago by ttom ▴ 230
2
votes
9
replies
3.3k
views
Capture Output files using glob
CWL
updated 7.4 years ago by ▴ 170 • written 7.4 years ago by ▴ 230
0
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0
replies
3.3k
views
Comment: C: Capture Output files using glob
7.4 years ago by ttom ▴ 230
0
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1
reply
3.0k
views
Comment: C: String editing for output file name
7.4 years ago by ttom ▴ 230
0
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0
replies
3.0k
views
Comment: C: String editing for output file name
7.4 years ago by ttom ▴ 230
1
vote
0
replies
2.5k
views
Comment: C: String concatenation for output
7.4 years ago by ttom ▴ 230
0
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0
replies
2.5k
views
Comment: C: String concatenation for output
7.4 years ago by ttom ▴ 230
5
votes
5
replies
2.5k
views
String concatenation for output
CWL
updated 7.4 years ago by ▴ 560 • written 7.4 years ago by ▴ 230
1
vote
0
replies
3.7k
views
Answer: A: Escape character usage in YML file - running tool in CWL
7.4 years ago by ttom ▴ 230
1
vote
1
reply
3.7k
views
Escape character usage in YML file - running tool in CWL
CWL YML YAML
7.4 years ago by ttom ▴ 230
1
vote
2
replies
3.9k
views
Problems connecting to NCBI using NCBI edirect
ncbi edirect esearch
7.6 years ago by ttom ▴ 230
0
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0
replies
2.7k
views
Answer: A: cramtools Java NoClassDefFoundError
9.4 years ago by ttom ▴ 230
0
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1
reply
2.7k
views
cramtools Java NoClassDefFoundError
cram cramtools
9.4 years ago by ttom ▴ 230
1
vote
0
replies
2.2k
views
Answer: A: Mutational Calling with SomaticSeq
9.6 years ago by ttom ▴ 230
0
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0
replies
2.9k
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Comment: C: Understanding SomaticSniper output
9.7 years ago by ttom ▴ 230
0
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1
reply
2.9k
views
Understanding SomaticSniper output
somaticsniper
9.7 years ago by ttom ▴ 230
5
votes
2
replies
6.3k
views
Tool or Script to convert MAF file to VCF ?
MAF VCF
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 230
0
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0
replies
6.3k
views
Comment: Comment: Tool or Script to convert MAF file to VCF ?
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 230
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