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0
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265
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SeqSQC can be used for sample QC of Whole Genome Sequencing Data
SeqSQC WGS
7 months ago by ttom ▴ 220
3
votes
3
replies
1.1k
views
How to choose LiftOver chain file
hg38tohg19 picard LiftOver
updated 7 months ago by ▴ 400 • written 7 months ago by ▴ 220
0
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1
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819
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Comment: Comment: bcftoold guess ploidy
9 months ago by ttom ▴ 220
0
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3
replies
819
views
bcftoold guess ploidy
bcftools guess-ploidy
updated 9 months ago by ★ 2.5k • written 9 months ago by ▴ 220
0
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1
reply
645
views
Annovar Error
annovar
10 months ago by ttom ▴ 220
0
votes
1
reply
492
views
SnpEff output VCF in `.gz` format
snpeff
updated 11 months ago by 161k • written 11 months ago by ▴ 220
0
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1
reply
673
views
Comment: Comment: Snpeff run with downloaded genome database
11 months ago by ttom ▴ 220
1
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2
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673
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Snpeff run with downloaded genome database
snpeff
updated 10 months ago by ▴ 10 • written 11 months ago by ▴ 220
1
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0
replies
944
views
Comment: Comment: GATK CombineGVCFs with genotypes './.'
22 months ago by ttom ▴ 220
1
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4
replies
944
views
GATK CombineGVCFs with genotypes './.'
GATK CombineGVCFs
22 months ago by ttom ▴ 220
0
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1
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944
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Comment: Comment: GATK CombineGVCFs with genotypes './.'
22 months ago by ttom ▴ 220
0
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0
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1.5k
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Comment: Comment: How to subset a GVCF using GATK SelectVariants
22 months ago by ttom ▴ 220
1
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3
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1.5k
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How to subset a GVCF using GATK SelectVariants
GATK SelectVariants
22 months ago by ttom ▴ 220
1
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0
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8.1k
views
Answer: A: GATK-Depth of Coverage - Issue with per gene coverage
updated 4.4 years ago by 43k • written 10.1 years ago by ▴ 220
0
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1
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14k
views
Comment: C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 4.6 years ago by 43k • written 10.6 years ago by ▴ 220
0
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1
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14k
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Comment: C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 4.6 years ago by 43k • written 10.6 years ago by ▴ 220
1
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1
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14k
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Comment: C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 4.6 years ago by 43k • written 10.6 years ago by ▴ 220
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0
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2.3k
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Comment: C: Capture Output files using glob
5.9 years ago by ttom ▴ 220
0
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1
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2.3k
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Comment: C: Capture Output files using glob
5.9 years ago by ttom ▴ 220
3
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0
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2.1k
views
Answer: A: Workflow Error - "list indices must be integers, not str"
5.9 years ago by ttom ▴ 220
3
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3
replies
2.1k
views
Workflow Error - "list indices must be integers, not str"
CWL
5.9 years ago by ttom ▴ 220
0
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0
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2.1k
views
Comment: C: Workflow Error - "list indices must be integers, not str"
5.9 years ago by ttom ▴ 220
0
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0
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4.8k
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Comment: C: CWL passing secondary files in a workflow
5.9 years ago by ttom ▴ 220
0
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1
reply
4.8k
views
Comment: C: CWL passing secondary files in a workflow
5.9 years ago by ttom ▴ 220
1
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0
replies
2.5k
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Comment: C: Input type array and Output type file, possible in CWL ?
5.9 years ago by ttom ▴ 220
3
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2
replies
2.5k
views
Input type array and Output type file, possible in CWL ?
CWL
5.9 years ago by ttom ▴ 220
0
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1
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4.8k
views
Comment: C: CWL passing secondary files in a workflow
5.9 years ago by ttom ▴ 220
3
votes
6
replies
4.8k
views
CWL passing secondary files in a workflow
CWL
updated 5.9 years ago by ▴ 170 • written 5.9 years ago by ▴ 220
0
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1
reply
2.3k
views
Comment: C: Capture Output files using glob
5.9 years ago by ttom ▴ 220
0
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0
replies
2.1k
views
Comment: C: String editing for output file name
5.9 years ago by ttom ▴ 220
1
vote
1
reply
2.1k
views
Answer: A: String editing for output file name
5.9 years ago by ttom ▴ 220
6
votes
9
replies
2.1k
views
String editing for output file name
CWL
5.9 years ago by ttom ▴ 220
0
votes
1
reply
2.3k
views
Comment: C: Capture Output files using glob
5.9 years ago by ttom ▴ 220
2
votes
9
replies
2.3k
views
Capture Output files using glob
CWL
updated 5.9 years ago by ▴ 170 • written 5.9 years ago by ▴ 220
0
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0
replies
2.3k
views
Comment: C: Capture Output files using glob
5.9 years ago by ttom ▴ 220
0
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1
reply
2.1k
views
Comment: C: String editing for output file name
5.9 years ago by ttom ▴ 220
0
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0
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2.1k
views
Comment: C: String editing for output file name
5.9 years ago by ttom ▴ 220
1
vote
0
replies
1.8k
views
Comment: C: String concatenation for output
5.9 years ago by ttom ▴ 220
0
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0
replies
1.8k
views
Comment: C: String concatenation for output
5.9 years ago by ttom ▴ 220
5
votes
5
replies
1.8k
views
String concatenation for output
CWL
updated 5.9 years ago by ▴ 560 • written 5.9 years ago by ▴ 220
1
vote
0
replies
3.2k
views
Answer: A: Escape character usage in YML file - running tool in CWL
5.9 years ago by ttom ▴ 220
1
vote
1
reply
3.2k
views
Escape character usage in YML file - running tool in CWL
CWL YML YAML
5.9 years ago by ttom ▴ 220
1
vote
2
replies
3.3k
views
Problems connecting to NCBI using NCBI edirect
ncbi edirect esearch
6.1 years ago by ttom ▴ 220
0
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0
replies
2.3k
views
Answer: A: cramtools Java NoClassDefFoundError
7.9 years ago by ttom ▴ 220
0
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1
reply
2.3k
views
cramtools Java NoClassDefFoundError
cram cramtools
7.9 years ago by ttom ▴ 220
1
vote
0
replies
1.8k
views
Answer: A: Mutational Calling with SomaticSeq
8.1 years ago by ttom ▴ 220
0
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0
replies
2.5k
views
Comment: C: Understanding SomaticSniper output
8.2 years ago by ttom ▴ 220
0
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1
reply
2.5k
views
Understanding SomaticSniper output
somaticsniper
8.2 years ago by ttom ▴ 220
5
votes
2
replies
5.5k
views
Tool or Script to convert MAF file to VCF ?
MAF VCF
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 220
0
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0
replies
5.5k
views
Comment: Comment: Tool or Script to convert MAF file to VCF ?
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 220
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