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17
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25
replies
23k
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htseq-counts output merge into one matrix ??
rna-seq
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 140
6
votes
11
replies
11k
views
DESEq2 warning while using GLM fitting
next-gen DESeq2 RNA-Seq R
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 140
0
votes
1
reply
3.8k
views
Sizefactors of DESeq2 and edgeR ??? Not equal while using normalization method = RLE of edgeR.
next-gen DE RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 140
0
votes
2
replies
2.0k
views
Bowtie --Col-Keepends Option
bowtie mapping
updated 7.9 years ago by 20 • written 10.3 years ago by ▴ 140
0
votes
8
replies
5.6k
views
miRNA annotation from miRBase 21
miRBase gene-annotation next-gen
updated 14 months ago by 43k • written 9.6 years ago by ▴ 140
2
votes
7
replies
4.1k
views
how to avoid if R packages are installed but not loaded ??
R bioconductor
updated 20 months ago by 43k • written 8.5 years ago by ▴ 140
0
votes
0
replies
2.7k
views
validation of novel DE miRNA predicted by mirdeep2
miRDeep2 next-gen RNA-Seq miRNA PCR
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 140
0
votes
0
replies
1.5k
views
Tool/Packages for integrated DE expression analysis of Time course miRAN and mRNA ?
mRNA R miRNA microarray
updated 19 months ago by 43k • written 8.7 years ago by ▴ 140
0
votes
1
reply
3.1k
views
Next maSigPro time course packages input problems ??
gene-expression RNA-Seq R biocounductor
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 140
2
votes
1
reply
4.1k
views
comparing each time point with deseq2 and their results
Gene-expression RNA-Seq R
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 140
1
vote
8
replies
4.0k
views
How to download / Prepare Rfam 12 gff/gtf/bed (an annotation file) ?
gene RNA dataset Assembly
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 140
7
votes
17
replies
6.9k
views
Problem is to design model matrix for edgeR
edgeR Differential-expression deseq R RNA-Seq
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 140
1
vote
11
replies
3.6k
views
Filteration of 0 counts in all column of the htseq-count metrics and add pseudo counts in remaining columns after filteration ??
htseq-counts RNA-seq
updated 14 months ago by 43k • written 9.5 years ago by ▴ 140
5
votes
3
replies
3.7k
views
Offline Tools or packages (prefer R and bioconductor packeges) for miRNA-seq time series counts data analysis of DE miRNAs ???
next-gen R RNA-Seq miRNA
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 140
3
votes
2
replies
3.9k
views
How to fetch genomic coordinates from fasta?
R RNA-Seq gene sequence
updated 14 months ago by 43k • written 9.9 years ago by ▴ 140
9
votes
6
replies
5.1k
views
Performing Anova Test For Ngs Time Series Datasets
microarray bioconductor
updated 14 months ago by 43k • written 10.2 years ago by ▴ 140
0
votes
2
replies
2.6k
views
Extraction Of Fastq Files (Seq + Quality Values) According To Lenght Distribution
fastq rna-seq
updated 10.2 years ago by 12k • written 10.2 years ago by ▴ 140
0
votes
3
replies
2.0k
views
Sam Quality Flag
alignment samtools bowtie
updated 14 months ago by 43k • written 10.3 years ago by ▴ 140
5
votes
15
replies
9.3k
views
Mirna And Deseq
differential-expression deseq
updated 14 months ago by 43k • written 10.3 years ago by ▴ 140
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