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Comment: Comment: Should I normalize read counts if I want to run plotPCA?
19 months ago by ella • 0
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1
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1.5k
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Comment: Comment: How to turn a column into a character string (to execute filterbyname.sh of the
19 months ago by ella • 0
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4.0k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
19 months ago by ella • 0
2
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7
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1.5k
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How to turn a column into a character string (to execute filterbyname.sh of the BBTools suite)
BBTools filterbyname.sh bash
updated 19 months ago by 45k • written 19 months ago by • 0
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1
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1.5k
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Comment: Comment: How to turn a column into a character string (to execute filterbyname.sh of the
19 months ago by ella • 0
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0
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1.5k
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Comment: Comment: plotCounts() error in R: indexing outside of limit
19 months ago by ella • 0
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1
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1.5k
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Comment: Comment: plotCounts() error in R: indexing outside of limit
20 months ago by ella • 0
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1.5k
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Comment: Comment: plotCounts() error in R: indexing outside of limit
20 months ago by ella • 0
2
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5
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1.5k
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plotCounts() error in R: indexing outside of limit
R DESeq2 DEG
19 months ago by ella • 0
0
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1
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891
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Comment: Comment: Removal of overexpression construct prior to analysis of differentially expresse
21 months ago by ella • 0
2
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3
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891
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Removal of overexpression construct prior to analysis of differentially expressed genes/ salmon?
DEG RNASeq DGE salmon DESeq2
updated 21 months ago by 154k • written 21 months ago by • 0
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4.0k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
2.0 years ago by ella • 0
0
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2
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4.0k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
updated 19 months ago by 45k • written 2.0 years ago by • 0
0
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1
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4.0k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
2.0 years ago by ella • 0
0
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0
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4.0k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
2.0 years ago by ella • 0
0
votes
1
reply
4.0k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
2.0 years ago by ella • 0
0
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0
replies
4.0k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
updated 2.0 years ago by 154k • written 2.0 years ago by • 0
0
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0
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4.0k
views
Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
2.0 years ago by ella • 0
0
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1
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4.0k
views
Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
2.0 years ago by ella • 0
4
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16
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4.0k
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How to subset large BAM files specifically/ extract specific subsets?
bamtools RNAseq samtools BAM
updated 19 months ago by 45k • written 2.0 years ago by • 0
0
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1
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129k
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Comment: Comment: How To Split A Bam File By Chromosome
2.0 years ago by ella • 0
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0
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1.3k
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Comment: Comment: How to find out what adapters to remove after FastQC of RNAseq data?
2.0 years ago by ella • 0
0
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1
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1.3k
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Comment: Comment: How to find out what adapters to remove after FastQC of RNAseq data?
2.0 years ago by ella • 0
1
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3
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1.3k
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How to find out what adapters to remove after FastQC of RNAseq data?
Trimmomatic FastQC NGS RNA-seq
2.0 years ago by ella • 0
0
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0
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508
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DGE analyses after expressing a construct - prior removal of construct-mapping reads?
RNAseq DGE Salmon DEG DESeq2
3.2 years ago by ella • 0
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0
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5.2k
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Comment: Comment: How do I match my transcript ID's from NCBI to the corresponding gene ID's to en
updated 3.2 years ago by 154k • written 3.2 years ago by • 0
0
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1
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1.8k
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Comment: Comment: Removing uncovered transcripts from multi FASTA reference file
3.8 years ago by ella • 0
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0
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1.8k
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Comment: Comment: Removing uncovered transcripts from multi FASTA reference file
4.0 years ago by ella • 0
0
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0
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1.8k
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Comment: Comment: Removing uncovered transcripts from multi FASTA reference file
4.0 years ago by ella • 0
3
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6
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1.8k
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Removing uncovered transcripts from multi FASTA reference file
RNASeq NGS Mapping reference FASTA
updated 3.8 years ago by 154k • written 4.0 years ago by • 0
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0
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2.7k
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Comment: Comment: Trimming overrepresented sequence possible with Trimmomatic?
4.2 years ago by ella • 0
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0
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2.7k
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Comment: Comment: Trimming overrepresented sequence possible with Trimmomatic?
4.2 years ago by ella • 0
0
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1
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2.7k
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Comment: Comment: Trimming overrepresented sequence possible with Trimmomatic?
4.3 years ago by ella • 0
3
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6
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2.7k
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Trimming overrepresented sequence possible with Trimmomatic?
rnaseq ngs overexpression trimmomatic gsnap
4.2 years ago by ella • 0
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0
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2.7k
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Comment: Comment: Trimming overrepresented sequence possible with Trimmomatic?
4.3 years ago by ella • 0
0
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0
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1.5k
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Comment: C: Puzzling NCBI BLAST+ output after transcriptome assembly
4.6 years ago by ella • 0
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2
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1.5k
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Comment: C: Puzzling NCBI BLAST+ output after transcriptome assembly
4.6 years ago by ella • 0
3
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8
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1.5k
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Puzzling NCBI BLAST+ output after transcriptome assembly
blast ncbi fasta transcriptome trinity
updated 4.6 years ago by 35k • written 4.6 years ago by • 0
1
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1
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2.2k
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determining read-depth of given size of genomic window via samtools
RNA-Seq next-gen samtools read-depth
5.2 years ago by ella • 0
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