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Comment:
Comment: Should I normalize read counts if I want to run plotPCA?
6 weeks ago by
ella
• 0
0
votes
1
reply
596
views
Comment:
Comment: How to turn a column into a character string (to execute filterbyname.sh of the
8 weeks ago by
ella
• 0
0
votes
0
replies
1.7k
views
Comment:
Comment: How to subset large BAM files specifically/ extract specific subsets?
9 weeks ago by
ella
• 0
2
votes
7
replies
596
views
How to turn a column into a character string (to execute filterbyname.sh of the BBTools suite)
BBTools
filterbyname.sh
bash
updated 8 weeks ago by
Ram
43k • written 9 weeks ago by
ella
• 0
0
votes
1
reply
596
views
Comment:
Comment: How to turn a column into a character string (to execute filterbyname.sh of the
9 weeks ago by
ella
• 0
0
votes
0
replies
569
views
Comment:
Comment: plotCounts() error in R: indexing outside of limit
9 weeks ago by
ella
• 0
0
votes
1
reply
569
views
Comment:
Comment: plotCounts() error in R: indexing outside of limit
3 months ago by
ella
• 0
0
votes
0
replies
569
views
Comment:
Comment: plotCounts() error in R: indexing outside of limit
3 months ago by
ella
• 0
2
votes
5
replies
569
views
plotCounts() error in R: indexing outside of limit
R
DESeq2
DEG
9 weeks ago by
ella
• 0
0
votes
1
reply
343
views
Comment:
Comment: Removal of overexpression construct prior to analysis of differentially expresse
3 months ago by
ella
• 0
2
votes
3
replies
343
views
Removal of overexpression construct prior to analysis of differentially expressed genes/ salmon?
DEG
RNASeq
DGE
salmon
DESeq2
updated 3 months ago by
GenoMax
141k • written 3 months ago by
ella
• 0
0
votes
0
replies
1.7k
views
Comment:
Comment: How to subset large BAM files specifically/ extract specific subsets?
6 months ago by
ella
• 0
0
votes
2
replies
1.7k
views
Comment:
Comment: How to subset large BAM files specifically/ extract specific subsets?
updated 8 weeks ago by
Ram
43k • written 6 months ago by
ella
• 0
0
votes
1
reply
1.7k
views
Comment:
Comment: How to subset large BAM files specifically/ extract specific subsets?
6 months ago by
ella
• 0
0
votes
0
replies
1.7k
views
Comment:
Comment: How to subset large BAM files specifically/ extract specific subsets?
6 months ago by
ella
• 0
0
votes
1
reply
1.7k
views
Comment:
Comment: How to subset large BAM files specifically/ extract specific subsets?
6 months ago by
ella
• 0
0
votes
0
replies
1.7k
views
Comment:
Comment: How to subset large BAM files specifically/ extract specific subsets?
updated 6 months ago by
GenoMax
141k • written 6 months ago by
ella
• 0
0
votes
0
replies
1.7k
views
Comment:
Comment: How to subset large BAM files specifically/ extract specific subsets?
6 months ago by
ella
• 0
0
votes
1
reply
1.7k
views
Comment:
Comment: How to subset large BAM files specifically/ extract specific subsets?
6 months ago by
ella
• 0
4
votes
16
replies
1.7k
views
How to subset large BAM files specifically/ extract specific subsets?
bamtools
RNAseq
samtools
BAM
updated 8 weeks ago by
Ram
43k • written 6 months ago by
ella
• 0
0
votes
1
reply
113k
views
Comment:
Comment: How To Split A Bam File By Chromosome
6 months ago by
ella
• 0
0
votes
0
replies
677
views
Comment:
Comment: How to find out what adapters to remove after FastQC of RNAseq data?
7 months ago by
ella
• 0
0
votes
1
reply
677
views
Comment:
Comment: How to find out what adapters to remove after FastQC of RNAseq data?
7 months ago by
ella
• 0
1
vote
3
replies
677
views
How to find out what adapters to remove after FastQC of RNAseq data?
Trimmomatic
FastQC
NGS
RNA-seq
7 months ago by
ella
• 0
0
votes
0
replies
334
views
DGE analyses after expressing a construct - prior removal of construct-mapping reads?
RNAseq
DGE
Salmon
DEG
DESeq2
21 months ago by
ella
• 0
0
votes
0
replies
3.4k
views
Comment:
Comment: How do I match my transcript ID's from NCBI to the corresponding gene ID's to en
updated 21 months ago by
GenoMax
141k • written 21 months ago by
ella
• 0
0
votes
1
reply
1.2k
views
Comment:
Comment: Removing uncovered transcripts from multi FASTA reference file
2.4 years ago by
ella
• 0
0
votes
0
replies
1.2k
views
Comment:
Comment: Removing uncovered transcripts from multi FASTA reference file
2.6 years ago by
ella
• 0
0
votes
0
replies
1.2k
views
Comment:
Comment: Removing uncovered transcripts from multi FASTA reference file
2.6 years ago by
ella
• 0
3
votes
6
replies
1.2k
views
Removing uncovered transcripts from multi FASTA reference file
RNASeq
NGS
Mapping
reference
FASTA
updated 2.4 years ago by
GenoMax
141k • written 2.6 years ago by
ella
• 0
0
votes
0
replies
1.8k
views
Comment:
Comment: Trimming overrepresented sequence possible with Trimmomatic?
2.8 years ago by
ella
• 0
0
votes
0
replies
1.8k
views
Comment:
Comment: Trimming overrepresented sequence possible with Trimmomatic?
2.8 years ago by
ella
• 0
0
votes
1
reply
1.8k
views
Comment:
Comment: Trimming overrepresented sequence possible with Trimmomatic?
2.9 years ago by
ella
• 0
3
votes
6
replies
1.8k
views
Trimming overrepresented sequence possible with Trimmomatic?
rnaseq
ngs
overexpression
trimmomatic
gsnap
2.8 years ago by
ella
• 0
0
votes
0
replies
1.8k
views
Comment:
Comment: Trimming overrepresented sequence possible with Trimmomatic?
2.9 years ago by
ella
• 0
0
votes
0
replies
899
views
Comment:
C: Puzzling NCBI BLAST+ output after transcriptome assembly
3.2 years ago by
ella
• 0
0
votes
2
replies
899
views
Comment:
C: Puzzling NCBI BLAST+ output after transcriptome assembly
3.2 years ago by
ella
• 0
3
votes
8
replies
899
views
Puzzling NCBI BLAST+ output after transcriptome assembly
blast
ncbi
fasta
transcriptome
trinity
updated 3.2 years ago by
h.mon
35k • written 3.2 years ago by
ella
• 0
1
vote
1
reply
1.7k
views
determining read-depth of given size of genomic window via samtools
RNA-Seq
next-gen
samtools
read-depth
3.7 years ago by
ella
• 0
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