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questions
2
votes
7
replies
620
views
How to turn a column into a character string (to execute filterbyname.sh of the BBTools suite)
BBTools
filterbyname.sh
bash
updated 9 weeks ago by
Ram
43k • written 10 weeks ago by
ella
• 0
2
votes
5
replies
585
views
plotCounts() error in R: indexing outside of limit
R
DESeq2
DEG
10 weeks ago by
ella
• 0
2
votes
3
replies
353
views
Removal of overexpression construct prior to analysis of differentially expressed genes/ salmon?
DEG
RNASeq
DGE
salmon
DESeq2
updated 4 months ago by
GenoMax
142k • written 4 months ago by
ella
• 0
4
votes
16
replies
1.8k
views
How to subset large BAM files specifically/ extract specific subsets?
bamtools
RNAseq
samtools
BAM
updated 10 weeks ago by
Ram
43k • written 7 months ago by
ella
• 0
1
vote
3
replies
693
views
How to find out what adapters to remove after FastQC of RNAseq data?
Trimmomatic
FastQC
NGS
RNA-seq
7 months ago by
ella
• 0
0
votes
0
replies
337
views
DGE analyses after expressing a construct - prior removal of construct-mapping reads?
RNAseq
DGE
Salmon
DEG
DESeq2
21 months ago by
ella
• 0
3
votes
6
replies
1.2k
views
Removing uncovered transcripts from multi FASTA reference file
RNASeq
NGS
Mapping
reference
FASTA
updated 2.4 years ago by
GenoMax
142k • written 2.6 years ago by
ella
• 0
3
votes
6
replies
1.8k
views
Trimming overrepresented sequence possible with Trimmomatic?
rnaseq
ngs
overexpression
trimmomatic
gsnap
2.8 years ago by
ella
• 0
3
votes
8
replies
912
views
Puzzling NCBI BLAST+ output after transcriptome assembly
blast
ncbi
fasta
transcriptome
trinity
updated 3.2 years ago by
h.mon
35k • written 3.2 years ago by
ella
• 0
1
vote
1
reply
1.7k
views
determining read-depth of given size of genomic window via samtools
RNA-Seq
next-gen
samtools
read-depth
3.7 years ago by
ella
• 0
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