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3
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3
replies
5.2k
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Answer: A: I'M Looking For A Bioinformatics Problem Which Could Benefit From A New Or Impro
updated 5.0 years ago by 45k • written 12.2 years ago by ▴ 280
0
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0
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5.2k
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Comment: C: I'M Looking For A Bioinformatics Problem Which Could Benefit From A New Or Impro
updated 5.0 years ago by 45k • written 11.2 years ago by ▴ 280
0
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0
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1.2k
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How do I specify a background gene list on reactome?
gene
6.3 years ago by spacemorrissey ▴ 280
0
votes
3
replies
1.9k
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How do I count the number of cell types in which a given gene is expressed?
RNA-Seq
updated 7.1 years ago by 20 • written 8.9 years ago by ▴ 280
1
vote
1
reply
2.5k
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Answer: A: What is the reasonable proportion of zero counts in single-cell RNA-Seq data
7.2 years ago by spacemorrissey ▴ 280
4
votes
0
replies
18k
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Answer: A: What is the "sliding window" in a bio statistical analysis, e.g. in a genome seq
7.2 years ago by spacemorrissey ▴ 280
3
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1
reply
5.4k
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Answer: A: How can I look at find 'open chromatin' from ATAC-seq data using MACS2
7.2 years ago by spacemorrissey ▴ 280
0
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0
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1.5k
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Comment: C: Analyzing CRISPR and RNAi genome wide screens
7.2 years ago by spacemorrissey ▴ 280
0
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1
reply
1.5k
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Analyzing CRISPR and RNAi genome wide screens
CRISPR RNAi meta analysis
7.2 years ago by spacemorrissey ▴ 280
3
votes
2
replies
3.0k
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Metabolomics Analysis - missing value imputation
metabolomics
updated 18 months ago by ▴ 30 • written 7.4 years ago by ▴ 280
0
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0
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1.6k
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Comment: C: how many columns does F-seq need in the bed file
8.2 years ago by spacemorrissey ▴ 280
0
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1
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1.6k
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Answer: A: how many columns does F-seq need in the bed file
8.2 years ago by spacemorrissey ▴ 280
0
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1
reply
3.5k
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Comment: C: How to report differentially expressed transcription factors in scatter plot
8.8 years ago by spacemorrissey ▴ 280
1
vote
1
reply
3.5k
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Answer: A: How to report differentially expressed transcription factors in scatter plot
8.8 years ago by spacemorrissey ▴ 280
0
votes
1
reply
1.9k
views
Looking for a Transcriptome meta-analysis algorithm
RNA-Seq
8.8 years ago by spacemorrissey ▴ 280
1
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0
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5.7k
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Comment: C: Why chip-seq is strand specific?
8.8 years ago by spacemorrissey ▴ 280
1
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1
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3.2k
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Answer: A: Gene regulatory network visualization and annotation
8.8 years ago by spacemorrissey ▴ 280
4
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1
reply
5.7k
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Answer: A: Why chip-seq is strand specific?
8.8 years ago by spacemorrissey ▴ 280
1
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0
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2.3k
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Comment: C: How to deal with "one probe-multi transcripts" problem?
8.8 years ago by spacemorrissey ▴ 280
0
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1
reply
1.9k
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Comment: C: How do I count the number of cell types in which a given gene is expressed?
8.9 years ago by spacemorrissey ▴ 280
0
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0
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1.5k
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Answer: A: How can you explain a high signal on a locus, while it's proven it can't be that
8.9 years ago by spacemorrissey ▴ 280
0
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0
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7.5k
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Answer: A: peaks overlap: ATAC & CHIP seq
8.9 years ago by spacemorrissey ▴ 280
0
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1
reply
2.3k
views
Answer: A: How to deal with "one probe-multi transcripts" problem?
8.9 years ago by spacemorrissey ▴ 280
0
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1
reply
9.5k
views
Answer: Answer: Top MACS peaks from ChIP-seq look identical to input
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 280
0
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0
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3.1k
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Comment: C: What Is The Best Way To Get Data Back Off Of Galaxy?
11.4 years ago by spacemorrissey ▴ 280
1
vote
0
replies
3.2k
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Bigwig To Wig On Galaxy
galaxy bigwig
updated 11.8 years ago by 20 • written 12.4 years ago by ▴ 280
8
votes
5
replies
5.4k
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What Is The Best Software For Finding Footprints In Mouse Dnase-Seq Data?
updated 12.0 years ago by ▴ 220 • written 12.4 years ago by ▴ 280
0
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0
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3.1k
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Answer: A: How Do I Get A Phylop Input File?
12.1 years ago by spacemorrissey ▴ 280
0
votes
0
replies
11k
views
Answer: A: Overlapping And Unique Peaks In Chipseq
12.3 years ago by spacemorrissey ▴ 280
0
votes
2
replies
3.1k
views
What Is The Best Way To Get Data Back Off Of Galaxy?
galaxy
12.4 years ago by spacemorrissey ▴ 280
0
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0
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5.4k
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Comment: C: What Is The Best Software For Finding Footprints In Mouse Dnase-Seq Data?
12.4 years ago by spacemorrissey ▴ 280
1
vote
1
reply
5.3k
views
Answer: A: Rank Chip-Seq Peaks Based On Motif Occurrence?
12.5 years ago by spacemorrissey ▴ 280
0
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1
reply
7.9k
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Answer: A: Encode Data For Dnase-Seq Peaks
12.5 years ago by spacemorrissey ▴ 280
1
vote
1
reply
7.2k
views
Answer: A: A Call For Clear Information On How To Use F-Seq For Faire-Seq
12.5 years ago by spacemorrissey ▴ 280
2
votes
1
reply
5.7k
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Answer: A: Differential Open Chromatin Locations From Dnase-Seq Data
12.5 years ago by spacemorrissey ▴ 280
1
vote
1
reply
8.7k
views
Answer: A: Chip-Seq Peak Calling Using Macs In Galaxy- Overlapping Peaks For Replicates
12.5 years ago by spacemorrissey ▴ 280
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