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0
votes
5
replies
291
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Is it possible to get a list of representative genomes from a past RefSeq release?
representative ncbi asembly refseq
updated 1 day ago by 141k • written 2 days ago by ▴ 90
0
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0
replies
423
views
I keep running into errors with the metagenomic classifer GOTTCHA. Can anybody offer some suggestions?
gottcha classification metagenomics
8 months ago by Bertalan_Takacs ▴ 90
3
votes
2
replies
1.1k
views
Subsetting DGEList object for for a list of genes of interest
dgelist transcriptomics subset edgeR
updated 17 months ago by 141k • written 17 months ago by ▴ 90
5
votes
2
replies
527
views
What does the semicolon notation mean in proteomics analysis
differential expression semicolon proteomics analysis
17 months ago by Bertalan_Takacs ▴ 90
4
votes
4
replies
1.0k
views
Precision-recall curve to compare metagenome classifiers to a gold standard - Is this even a viable method?
classification recall precision metagenome
8 months ago by Bertalan_Takacs ▴ 90
0
votes
0
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349
views
Microbiome beta-diversity: Bray-Curtis dissimilarity seems to be biased toward more diverse populations
bray-curtis beta-diversity microbiome classification dissimilarity
22 months ago by Bertalan_Takacs ▴ 90
0
votes
0
replies
304
views
Immediate segmentation error when using STAR on SMART-Seq data
segmentation smart-seq dumped scRNA-seq STAR
23 months ago by Bertalan_Takacs ▴ 90
2
votes
1
reply
866
views
Galaxy error "FATAL: container creation failed"
cellranger galaxy pipeline containercreation scrna-seq
updated 23 months ago by 141k • written 23 months ago by ▴ 90
5
votes
3
replies
4.1k
views
BLAST nr download and build - "nr.gz: invalid compressed data--format violated"
gzip nr BLAST
updated 13 months ago by 43k • written 2.2 years ago by ▴ 90
2
votes
2
replies
630
views
How to treat bacterial genomes made up of multiple scaffolds in in silico metagenome data generation
ncbi generation assembly metagenome insilico
2.2 years ago by Bertalan_Takacs ▴ 90
0
votes
3
replies
2.7k
views
Can't download files from the ENA (European Nucleotide Archive) site
ENA
updated 13 months ago by 43k • written 3.1 years ago by ▴ 90
1
vote
1
reply
898
views
What is the best way for bacterial variant calling?
mutation prokaryote illumina variant calling
updated 2.8 years ago by 100k • written 2.8 years ago by ▴ 90
0
votes
0
replies
548
views
Generating random bed with interval lenghts following exponential distribution
length bed distribution intervals random
2.9 years ago by Bertalan_Takacs ▴ 90
0
votes
0
replies
661
views
A question about analyzing MACS2 outputs
broad-peak dropa drip-seq macs2
3.1 years ago by Bertalan_Takacs ▴ 90
0
votes
0
replies
714
views
Reporting Kraken output in Sunbeam
metagenome sunbeam conda kraken2 multiqc
3.4 years ago by Bertalan_Takacs ▴ 90
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