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questions
0
votes
0
replies
443
views
Are there "gold standard" datasets for identification of antibiotic resistance genes from metagenomic samples?
amr
antibiotic
resistance
classification
metagenomics
5 weeks ago by
Bertalan_Takacs
▴ 100
3
votes
3
replies
484
views
Check if a BAM file is corrupt in Java
bam
java
updated 3 months ago by
Pierre Lindenbaum
164k • written 3 months ago by
Bertalan_Takacs
▴ 100
2
votes
1
reply
379
views
How to cluster microbial samples after principal coordinate analysis based on beta-diversity
clustering
bray-curtis
microbiome
pcoa
updated 5 months ago by
Mensur Dlakic
★ 28k • written 5 months ago by
Bertalan_Takacs
▴ 100
0
votes
5
replies
660
views
Is it possible to get a list of representative genomes from a past RefSeq release?
representative
ncbi
asembly
refseq
updated 6 months ago by
GenoMax
147k • written 6 months ago by
Bertalan_Takacs
▴ 100
0
votes
0
replies
505
views
I keep running into errors with the metagenomic classifer GOTTCHA. Can anybody offer some suggestions?
gottcha
classification
metagenomics
15 months ago by
Bertalan_Takacs
▴ 100
3
votes
2
replies
1.3k
views
Subsetting DGEList object for for a list of genes of interest
dgelist
transcriptomics
subset
edgeR
updated 2.0 years ago by
GenoMax
147k • written 2.0 years ago by
Bertalan_Takacs
▴ 100
5
votes
2
replies
670
views
What does the semicolon notation mean in proteomics analysis
differential
expression
semicolon
proteomics
analysis
2.0 years ago by
Bertalan_Takacs
▴ 100
4
votes
4
replies
1.3k
views
Precision-recall curve to compare metagenome classifiers to a gold standard - Is this even a viable method?
classification
recall
precision
metagenome
15 months ago by
Bertalan_Takacs
▴ 100
0
votes
0
replies
454
views
Microbiome beta-diversity: Bray-Curtis dissimilarity seems to be biased toward more diverse populations
bray-curtis
beta-diversity
microbiome
classification
dissimilarity
2.4 years ago by
Bertalan_Takacs
▴ 100
0
votes
0
replies
368
views
Immediate segmentation error when using STAR on SMART-Seq data
segmentation
smart-seq
dumped
scRNA-seq
STAR
2.5 years ago by
Bertalan_Takacs
▴ 100
2
votes
1
reply
975
views
Galaxy error "FATAL: container creation failed"
cellranger
galaxy
pipeline
containercreation
scrna-seq
updated 2.5 years ago by
GenoMax
147k • written 2.5 years ago by
Bertalan_Takacs
▴ 100
5
votes
3
replies
4.9k
views
BLAST nr download and build - "nr.gz: invalid compressed data--format violated"
gzip
nr
BLAST
updated 20 months ago by
Ram
44k • written 2.7 years ago by
Bertalan_Takacs
▴ 100
2
votes
2
replies
756
views
How to treat bacterial genomes made up of multiple scaffolds in in silico metagenome data generation
ncbi
generation
assembly
metagenome
insilico
2.8 years ago by
Bertalan_Takacs
▴ 100
0
votes
3
replies
3.2k
views
Can't download files from the ENA (European Nucleotide Archive) site
ENA
updated 20 months ago by
Ram
44k • written 3.7 years ago by
Bertalan_Takacs
▴ 100
1
vote
1
reply
1.0k
views
What is the best way for bacterial variant calling?
mutation
prokaryote
illumina
variant
calling
updated 3.3 years ago by
Istvan Albert
101k • written 3.3 years ago by
Bertalan_Takacs
▴ 100
0
votes
0
replies
632
views
Generating random bed with interval lenghts following exponential distribution
length
bed
distribution
intervals
random
3.5 years ago by
Bertalan_Takacs
▴ 100
0
votes
0
replies
752
views
A question about analyzing MACS2 outputs
broad-peak
dropa
drip-seq
macs2
3.6 years ago by
Bertalan_Takacs
▴ 100
0
votes
0
replies
766
views
Reporting Kraken output in Sunbeam
metagenome
sunbeam
conda
kraken2
multiqc
4.0 years ago by
Bertalan_Takacs
▴ 100
18 results • Page
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