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3
votes
2
replies
253
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Precision-recall curve to compare metagenome classifiers to a gold standard - Is this even a viable method?
classification recall precision metagenome
updated 21 days ago by 10k • written 22 days ago by ▴ 60
0
votes
0
replies
113
views
Microbiome beta-diversity: Bray-Curtis dissimilarity seems to be biased toward more diverse populations
bray-curtis beta-diversity microbiome classification dissimilarity
7 weeks ago by Bertalan_Takacs ▴ 60
0
votes
0
replies
96
views
Immediate segmentation error when using STAR on SMART-Seq data
segmentation smart-seq dumped scRNA-seq STAR
10 weeks ago by Bertalan_Takacs ▴ 60
1
vote
1
reply
327
views
Comment: Comment: barcode in the fastq files
3 months ago by Bertalan_Takacs ▴ 60
2
votes
1
reply
198
views
Galaxy error "FATAL: container creation failed"
cellranger galaxy pipeline containercreation scrna-seq
updated 3 months ago by 118k • written 3 months ago by ▴ 60
2
votes
1
reply
515
views
Answer: Answer: Microbial community analysis pipelines in metagenomics
5 months ago by Bertalan_Takacs ▴ 60
3
votes
3
replies
808
views
BLAST nr download and build - "nr.gz: invalid compressed data--format violated"
gzip download nr BLAST ftp
updated 12 weeks ago by • 0 • written 5 months ago by ▴ 60
2
votes
1
reply
808
views
Answer: Answer: BLAST nr download and build - "nr.gz: invalid compressed data--format violated"
5 months ago by Bertalan_Takacs ▴ 60
0
votes
0
replies
328
views
Comment: Comment: How to threat bacterial genomes made up of multiple scaffolds in in silico metag
6 months ago by Bertalan_Takacs ▴ 60
2
votes
2
replies
328
views
How to treat bacterial genomes made up of multiple scaffolds in in silico metagenome data generation
ncbi generation assembly metagenome insilico
6 months ago by Bertalan_Takacs ▴ 60
0
votes
3
replies
1.3k
views
Can't download files from the ENA (European Nucleotide Archive) site
ENA nucleotide archive download
updated 10 months ago by • 0 • written 17 months ago by ▴ 60
1
vote
1
reply
443
views
What is the best way for bacterial variant calling?
mutation prokaryote illumina variant calling
updated 13 months ago by 94k • written 13 months ago by ▴ 60
0
votes
0
replies
304
views
Generating random bed with interval lenghts following exponential distribution
length bed distribution intervals random
14 months ago by Bertalan_Takacs ▴ 60
0
votes
0
replies
353
views
A question about analyzing MACS2 outputs
broad-peak dropa drip-seq macs2
16 months ago by Bertalan_Takacs ▴ 60
0
votes
0
replies
1.3k
views
Comment: A: Can't download files from the ENA (European Nucleotide Archive) site
16 months ago by Bertalan_Takacs ▴ 60
0
votes
0
replies
422
views
Reporting Kraken output in Sunbeam
metagenome sunbeam conda kraken2 multiqc
21 months ago by Bertalan_Takacs ▴ 60
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