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3
votes
3
replies
440
views
Check if a BAM file is corrupt in Java
bam java
updated 6 weeks ago by 163k • written 7 weeks ago by ▴ 100
2
votes
1
reply
337
views
How to cluster microbial samples after principal coordinate analysis based on beta-diversity
clustering bray-curtis microbiome pcoa
updated 3 months ago by ★ 28k • written 3 months ago by ▴ 100
0
votes
1
reply
609
views
Comment: Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
4 months ago by Bertalan_Takacs ▴ 100
0
votes
1
reply
609
views
Comment: Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
4 months ago by Bertalan_Takacs ▴ 100
0
votes
5
replies
609
views
Is it possible to get a list of representative genomes from a past RefSeq release?
representative ncbi asembly refseq
updated 4 months ago by 145k • written 4 months ago by ▴ 100
0
votes
0
replies
1.6k
views
Comment: Comment: esearch get taxonomy ID from a large list of accession IDs
5 months ago by Bertalan_Takacs ▴ 100
0
votes
0
replies
1.2k
views
Comment: Comment: Precision-recall curve to compare metagenome classifiers to a gold standard - Is
13 months ago by Bertalan_Takacs ▴ 100
0
votes
0
replies
485
views
I keep running into errors with the metagenomic classifer GOTTCHA. Can anybody offer some suggestions?
gottcha classification metagenomics
13 months ago by Bertalan_Takacs ▴ 100
3
votes
2
replies
1.3k
views
Subsetting DGEList object for for a list of genes of interest
dgelist transcriptomics subset edgeR
updated 22 months ago by 145k • written 22 months ago by ▴ 100
1
vote
0
replies
638
views
Comment: Comment: What does the semicolon notation mean in proteomics analysis
22 months ago by Bertalan_Takacs ▴ 100
5
votes
2
replies
638
views
What does the semicolon notation mean in proteomics analysis
differential expression semicolon proteomics analysis
22 months ago by Bertalan_Takacs ▴ 100
4
votes
4
replies
1.2k
views
Precision-recall curve to compare metagenome classifiers to a gold standard - Is this even a viable method?
classification recall precision metagenome
13 months ago by Bertalan_Takacs ▴ 100
0
votes
0
replies
435
views
Microbiome beta-diversity: Bray-Curtis dissimilarity seems to be biased toward more diverse populations
bray-curtis beta-diversity microbiome classification dissimilarity
2.3 years ago by Bertalan_Takacs ▴ 100
0
votes
0
replies
357
views
Immediate segmentation error when using STAR on SMART-Seq data
segmentation smart-seq dumped scRNA-seq STAR
2.3 years ago by Bertalan_Takacs ▴ 100
1
vote
1
reply
2.5k
views
Comment: Comment: barcode in the fastq files
2.4 years ago by Bertalan_Takacs ▴ 100
2
votes
1
reply
961
views
Galaxy error "FATAL: container creation failed"
cellranger galaxy pipeline containercreation scrna-seq
updated 2.4 years ago by 145k • written 2.4 years ago by ▴ 100
3
votes
1
reply
1.2k
views
Answer: Answer: Microbial community analysis pipelines in metagenomics
2.5 years ago by Bertalan_Takacs ▴ 100
5
votes
3
replies
4.7k
views
BLAST nr download and build - "nr.gz: invalid compressed data--format violated"
gzip nr BLAST
updated 18 months ago by 44k • written 2.6 years ago by ▴ 100
3
votes
1
reply
4.7k
views
Answer: Answer: BLAST nr download and build - "nr.gz: invalid compressed data--format violated"
2.5 years ago by Bertalan_Takacs ▴ 100
0
votes
0
replies
728
views
Comment: Comment: How to threat bacterial genomes made up of multiple scaffolds in in silico metag
2.6 years ago by Bertalan_Takacs ▴ 100
2
votes
2
replies
728
views
How to treat bacterial genomes made up of multiple scaffolds in in silico metagenome data generation
ncbi generation assembly metagenome insilico
2.6 years ago by Bertalan_Takacs ▴ 100
0
votes
3
replies
3.1k
views
Can't download files from the ENA (European Nucleotide Archive) site
ENA
updated 18 months ago by 44k • written 3.5 years ago by ▴ 100
1
vote
1
reply
988
views
What is the best way for bacterial variant calling?
mutation prokaryote illumina variant calling
updated 3.2 years ago by 101k • written 3.2 years ago by ▴ 100
0
votes
0
replies
611
views
Generating random bed with interval lenghts following exponential distribution
length bed distribution intervals random
3.3 years ago by Bertalan_Takacs ▴ 100
0
votes
0
replies
732
views
A question about analyzing MACS2 outputs
broad-peak dropa drip-seq macs2
3.5 years ago by Bertalan_Takacs ▴ 100
0
votes
0
replies
3.1k
views
Comment: A: Can't download files from the ENA (European Nucleotide Archive) site
3.5 years ago by Bertalan_Takacs ▴ 100
0
votes
0
replies
753
views
Reporting Kraken output in Sunbeam
metagenome sunbeam conda kraken2 multiqc
3.8 years ago by Bertalan_Takacs ▴ 100
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