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comments
3
votes
14
replies
3.9k
views
Trouble with bedtools getfasta
bedtools
getfasta
written 2.1 years ago by
gkunz
▴ 20
0
votes
1
reply
399
views
Database for exploring genes regulated by a given transcription factor
Gene
Transcription-Factor
updated 9 months ago by
Ram
43k • written 14 months ago by
gkunz
▴ 20
0
votes
1
reply
417
views
Generating a novel sequence that does not align with a given genome (Scrabled LNA probe generation)
genomes
probes
misalignment
LNA
updated 18 months ago by
Matthias Zepper
4.5k • written 18 months ago by
gkunz
▴ 20
0
votes
1
reply
924
views
Comment:
Comment: R tools for perform IDR analysis on more than 2 replicates?
18 months ago by
gkunz
▴ 20
0
votes
4
replies
924
views
R tools for perform IDR analysis on more than 2 replicates?
R
IDR
ChIP-seq
updated 18 months ago by
ATpoint
81k • written 18 months ago by
gkunz
▴ 20
0
votes
0
replies
647
views
Comment:
Comment: Retreiving GOterms ID from the Term Description
23 months ago by
gkunz
▴ 20
2
votes
3
replies
647
views
Retreiving GOterms ID from the Term Description
terms
GO
23 months ago by
gkunz
▴ 20
0
votes
0
replies
300
views
Tools for associating enhancer sequences with target genes in non-model organisms
gene-association
enhancers
updated 9 months ago by
Ram
43k • written 2.0 years ago by
gkunz
▴ 20
0
votes
1
reply
1.2k
views
Comment:
Comment: Appropriately Establishing FIMO background
2.1 years ago by
gkunz
▴ 20
0
votes
5
replies
1.2k
views
Appropriately Establishing FIMO background
H3K27ac
FIMO
MEME-SUITE
IDENTIFICATION
MOTIF
updated 2.1 years ago by
Malcolm.Cook
★ 1.5k • written 2.1 years ago by
gkunz
▴ 20
0
votes
1
reply
1.2k
views
Comment:
Comment: Appropriately Establishing FIMO background
2.1 years ago by
gkunz
▴ 20
0
votes
1
reply
3.9k
views
Comment:
Comment: Trouble with bedtools getfasta
2.1 years ago by
gkunz
▴ 20
0
votes
0
replies
3.9k
views
Comment:
Comment: Trouble with bedtools getfasta
2.1 years ago by
gkunz
▴ 20
0
votes
0
replies
3.9k
views
Comment:
Comment: Trouble with bedtools getfasta
2.1 years ago by
gkunz
▴ 20
0
votes
1
reply
3.9k
views
Comment:
Comment: Trouble with bedtools getfasta
2.1 years ago by
gkunz
▴ 20
0
votes
0
replies
3.9k
views
Comment:
Comment: Trouble with bedtools getfasta
2.1 years ago by
gkunz
▴ 20
0
votes
0
replies
3.9k
views
Comment:
Comment: Trouble with bedtools getfasta
2.1 years ago by
gkunz
▴ 20
1
vote
6
replies
3.1k
views
Preparing ChIP-seq data for analysis with DESeq2
DESeq2
ChIP-seq
updated 2.3 years ago by
tom
• 0 • written 2.9 years ago by
gkunz
▴ 20
0
votes
0
replies
1.5k
views
Comment:
Comment: Generating a background file to be used by Homer for motif identification
2.8 years ago by
gkunz
▴ 20
0
votes
2
replies
1.5k
views
Generating a background file to be used by Homer for motif identification
homer
2.8 years ago by
gkunz
▴ 20
0
votes
1
reply
3.1k
views
Comment:
Comment: Preparing ChIP-seq data for analysis with DESeq2
2.9 years ago by
gkunz
▴ 20
1
vote
0
replies
3.1k
views
Comment:
Comment: Preparing ChIP-seq data for analysis with DESeq2
2.9 years ago by
gkunz
▴ 20
0
votes
0
replies
499
views
What size regions to use for motif Identification from differential H3K27ac peaks ?
H3K27ac
homer
motif
2.9 years ago by
gkunz
▴ 20
0
votes
0
replies
728
views
DiffBind3 outputs compared to previous versions
DiffBind3
R
ChIP-seq
EdgeR
Deseq2
2.9 years ago by
gkunz
▴ 20
3
votes
7
replies
1.7k
views
Can too high of a ChIPQC RiP% be indicative of insufficient stringency in peak calling?
R
ChIP-seq
ChIPQC
updated 2.9 years ago by
dariober
14k • written 2.9 years ago by
gkunz
▴ 20
0
votes
1
reply
1.7k
views
Comment:
Comment: Can too high of a ChIPQC RiP% be indicative of insufficient stringency in peak c
2.9 years ago by
gkunz
▴ 20
0
votes
0
replies
1.1k
views
Comment:
Comment: ChIPQC reporting fewer reads in bam than are actually present
3.0 years ago by
gkunz
▴ 20
0
votes
1
reply
1.1k
views
Comment:
Comment: ChIPQC reporting fewer reads in bam than are actually present
3.0 years ago by
gkunz
▴ 20
1
vote
4
replies
1.1k
views
ChIPQC reporting fewer reads in bam than are actually present
R
ChIPseq
ChIPQC
3.0 years ago by
gkunz
▴ 20
0
votes
0
replies
1.4k
views
Extracting background utilized by Homer for motif finding
homer
ChIP-Seq
3.3 years ago by
gkunz
▴ 20
0
votes
0
replies
890
views
Loading Data Into TopGO with p.values
ChIP-Seq
topGO
3.4 years ago by
gkunz
▴ 20
1
vote
1
reply
1.2k
views
Comment:
C: Alternative/Incorrect DiffBind outputs for each contrast when providing entire v
3.5 years ago by
gkunz
▴ 20
3
votes
3
replies
1.2k
views
Alternative/Incorrect DiffBind outputs for each contrast when providing entire vs. partial datasheet
ChIP-Seq
software error
DiffBind
updated 3.5 years ago by
jared.andrews07
★ 16k • written 3.5 years ago by
gkunz
▴ 20
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